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NC_070936.1__YP_010665595.1__PQB72_gp134__00134

Bact-Vir

NC_070936.1__YP_010665595.1__PQB72_gp134__00134

Identity

Accession:
NC_070936 ↗
Kingdom:
phage

Quality

61.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Nimduovirus› Klebsiella_phage_N1M2

TaxID: 2664939

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-122
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.66 46.0 4.40e-01 70.8% 93.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.98e-01 71.9% 93.9%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 42.0 4.95e-01 71.9% 100.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 5.12e-01 83.1% 100.0%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.83e-01 70.8% 98.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.70e-01 77.5% 92.4%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 4.82e-01 75.3% 100.0%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.65e-01 74.2% 96.0%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.70e-01 71.9% 100.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.48e-01 70.8% 91.3%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 41.0 3.07e-01 73.0% 54.1%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.55e-01 86.5% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.46e-01 87.6% 86.7%
2jwpA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.56 40.0 3.24e-01 75.3% 99.4%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.03e-01 82.0% 92.6%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 37.0 3.77e-01 73.0% 71.4%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.88e-01 95.5% 79.6%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 44.0 3.57e-01 92.1% 87.8%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 38.0 2.95e-01 74.2% 71.8%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 36.0 3.60e-01 70.8% 95.8%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 47.0 4.05e-01 100.0% 78.0%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 35.0 3.27e-01 70.8% 80.0%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 2.97e-01 70.8% 76.3%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.61e-01 91.0% 59.0%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.50 34.0 3.57e-01 70.8% 81.0%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 44.0 4.14e-01 98.9% 100.0%
1kiuB01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.50 37.0 3.11e-01 78.7% 68.6%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3514191 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 50.0 4.84e-01 71.9% 79.0%
3228278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 41.0 4.74e-01 73.0% 89.2%
3245045 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.63 44.0 3.41e-01 71.9% 68.0%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.62 42.0 4.79e-01 84.3% 95.4%
3936053 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.61 44.0 4.89e-01 75.3% 100.0%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.61 44.0 4.16e-01 79.8% 63.8%
3756428 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.59 42.0 4.09e-01 74.2% 84.0%
3825252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.53e-01 80.9% 91.1%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.03e-01 80.9% 60.0%
3277790 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 40.0 3.84e-01 71.9% 100.0%
3397845 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.78e-01 70.8% 75.2%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 39.0 4.31e-01 85.4% 87.1%
5028091 3127.1.1.1 ↗ beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 0.57 41.0 4.06e-01 75.3% 80.0%
4950723 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 41.0 3.96e-01 76.4% 75.2%
3609787 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 40.0 3.57e-01 79.8% 68.1%
4197746 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.54 38.0 3.89e-01 73.0% 90.6%
1316605 10.32.1.50 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5077 0.54 42.0 3.75e-01 85.4% 64.1%
3226649 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 41.0 3.21e-01 91.0% 37.5%
3532264 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.53 41.0 3.45e-01 91.0% 48.4%
4099249 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 42.0 3.52e-01 87.6% 92.9%
3492162 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 40.0 3.45e-01 91.0% 50.0%
6452 4111.1.1.1 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy 0.52 40.0 4.24e-01 85.4% 94.8%
1161323 1.1.5.14 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S29 0.52 37.0 2.99e-01 75.3% 80.7%
3291549 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 36.0 3.46e-01 73.0% 96.2%
4132165 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 38.0 3.61e-01 80.9% 100.0%
3911511 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.50 35.0 3.40e-01 74.2% 84.8%
3494269 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.50 39.0 2.67e-01 91.0% 22.0%
D2 high residues 141-225
PDB
D3 medium residues 236-301
PDB