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NC_070936.1__YP_010665599.1__PQB72_gp138__00138

Bact-Vir

NC_070936.1__YP_010665599.1__PQB72_gp138__00138

Identity

Accession:
NC_070936 ↗
Kingdom:
phage

Quality

59.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-92
PDB
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 60.0 6.08e-01 100.0% 92.1%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.71 63.0 4.39e-01 100.0% 84.8%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.68 60.0 3.75e-01 100.0% 22.4%
4r1kB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 58.0 4.56e-01 100.0% 83.1%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.63 47.0 4.03e-01 100.0% 49.1%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 54.0 4.21e-01 100.0% 98.0%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 54.0 4.38e-01 100.0% 91.4%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 53.0 4.35e-01 98.4% 92.7%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 52.0 4.89e-01 100.0% 85.7%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 44.0 3.46e-01 76.6% 37.3%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 54.0 4.37e-01 100.0% 87.1%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.59 52.0 3.78e-01 100.0% 73.8%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 39.0 2.73e-01 79.7% 20.3%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 4.08e-01 100.0% 87.8%
1kczA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 44.0 3.36e-01 82.8% 83.4%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 49.0 3.29e-01 100.0% 26.4%
2oztA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 44.0 3.62e-01 82.8% 78.8%
3ec7A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 50.0 4.10e-01 100.0% 56.6%
5e6zC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.81e-01 84.4% 66.0%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.58 42.0 3.35e-01 79.7% 50.4%
1tkkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 43.0 3.62e-01 82.8% 91.3%
3plsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 45.0 3.93e-01 90.6% 83.7%
1wueB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 43.0 3.36e-01 82.8% 73.2%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 47.0 3.53e-01 100.0% 35.5%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 40.0 2.69e-01 75.0% 45.9%
1u4dA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 46.0 4.31e-01 92.2% 94.0%
5tkyA04 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.57 42.0 3.48e-01 79.7% 69.8%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 42.0 3.70e-01 82.8% 91.3%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 49.0 3.15e-01 100.0% 24.5%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 43.0 3.60e-01 82.8% 90.4%
3ktaA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 40.0 3.09e-01 78.1% 68.9%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 43.0 3.35e-01 82.8% 70.2%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.56 45.0 3.85e-01 90.6% 56.5%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 42.0 3.33e-01 82.8% 71.8%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 42.0 3.41e-01 82.8% 81.4%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 42.0 3.41e-01 82.8% 82.0%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 42.0 3.34e-01 82.8% 73.0%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.76e-01 81.2% 95.3%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.95e-01 95.3% 97.2%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 41.0 3.59e-01 84.4% 100.0%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 40.0 3.29e-01 79.7% 76.9%
5d5gA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.54 40.0 3.39e-01 81.2% 60.6%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 40.0 3.33e-01 82.8% 79.5%
2gl5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 41.0 3.28e-01 82.8% 76.7%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.53 38.0 3.31e-01 78.1% 57.0%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.53 46.0 4.00e-01 100.0% 79.8%
2oz8A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.27e-01 82.8% 77.5%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 2.94e-01 87.5% 96.8%
3v98A03 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.79e-01 100.0% 86.2%
4iz6A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.53 46.0 3.93e-01 100.0% 60.4%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 37.0 3.12e-01 78.1% 60.0%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.52 45.0 3.99e-01 96.9% 81.9%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 39.0 3.27e-01 84.4% 82.4%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 39.0 3.18e-01 82.8% 79.2%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 39.0 3.18e-01 82.8% 83.5%
2nqlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 38.0 2.92e-01 82.8% 76.8%
6s5xA01 2.60.40.3600 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.71e-01 82.8% 70.7%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 39.0 3.35e-01 82.8% 88.8%
1fjmB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 35.0 2.36e-01 73.4% 80.6%
2oqhA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 38.0 3.23e-01 82.8% 78.9%
1ecsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 42.0 3.56e-01 98.4% 84.2%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 42.0 3.27e-01 100.0% 39.9%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3721835 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 57.0 4.37e-01 100.0% 81.7%
4961703 7579.1.1.45 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_7 0.64 49.0 3.09e-01 82.8% 30.5%
3735183 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.62 54.0 4.39e-01 100.0% 88.8%
2553892 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.62 54.0 4.43e-01 100.0% 94.2%
1562270 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 53.0 4.33e-01 100.0% 87.1%
3702817 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.61 43.0 3.52e-01 78.1% 91.0%
3950757 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.61 53.0 4.41e-01 100.0% 84.3%
3812918 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.61 52.0 3.67e-01 100.0% 30.9%
3614636 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 51.0 3.15e-01 100.0% 27.0%
6400 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.60 52.0 4.32e-01 100.0% 96.6%
4941815 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 47.0 4.04e-01 84.4% 82.0%
3261242 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 44.0 3.11e-01 78.1% 64.7%
5025077 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.59 44.0 4.52e-01 84.4% 85.0%
3179348 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 44.0 3.09e-01 79.7% 61.6%
3725666 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.59 47.0 3.60e-01 93.8% 74.3%
3257603 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 44.0 3.68e-01 82.8% 89.2%
5071208 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.58 45.0 3.84e-01 84.4% 82.9%
3631132 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 46.0 2.87e-01 87.5% 22.4%
3627380 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.22e-01 100.0% 24.6%
3905640 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.58 45.0 2.98e-01 90.6% 27.0%
5068089 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.57 44.0 3.71e-01 85.9% 50.4%
3973036 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 50.0 3.64e-01 100.0% 73.5%
149135 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.56 43.0 3.55e-01 82.8% 83.9%
133867 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.56 42.0 3.48e-01 82.8% 83.6%
None 0.55 44.0 2.93e-01 90.6% 27.9%
4132235 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 41.0 2.73e-01 82.8% 35.7%
3255969 2004.1.1.174 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 0.54 44.0 3.00e-01 93.8% 93.9%
4634274 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.54 40.0 3.52e-01 82.8% 94.3%
136368 9.1.1.18 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ApoM 0.53 43.0 3.25e-01 92.2% 43.5%
5080433 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.56e-01 82.8% 87.4%
4943626 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.53 44.0 3.73e-01 100.0% 64.2%
3599716 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.53 45.0 3.11e-01 100.0% 55.5%
3240511 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.52 42.0 3.63e-01 90.6% 84.8%
3232668 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 44.0 2.90e-01 96.9% 28.7%
3590166 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.52 43.0 3.27e-01 100.0% 35.7%
4647660 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 38.0 3.59e-01 85.9% 63.7%
3925996 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 40.0 2.71e-01 92.2% 29.7%
2557442 3414.1.1.2 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Rib 0.52 39.0 3.68e-01 84.4% 68.3%
3838638 3739.1.1.0 beta sandwiches › TraO N-terminal domain › TraO N-terminal domain › TraO N-terminal domain 0.52 42.0 3.97e-01 93.8% 96.2%
4935709 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.51 39.0 3.34e-01 82.8% 70.5%
3238801 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.51 40.0 2.43e-01 85.9% 15.6%
4026147 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 43.0 3.23e-01 98.4% 71.7%
4000387 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.25e-01 87.5% 48.6%
163477 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.51 38.0 3.23e-01 82.8% 80.7%
3807468 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 44.0 3.07e-01 100.0% 35.6%
4392321 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.51 37.0 3.28e-01 82.8% 94.3%
5060717 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.50 39.0 3.82e-01 84.4% 94.3%
3372861 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.50 41.0 3.48e-01 96.9% 60.0%
3268665 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.19e-01 82.8% 72.5%