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NC_070937.1__YP_010665727.1__PQB73_gp009__00009

Bact-Vir

NC_070937.1__YP_010665727.1__PQB73_gp009__00009

Identity

Accession:
NC_070937 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Nanhuvirus› Cronobacter_phage_LPCS28

TaxID: 2924885

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-85
PDB
Domain cluster: rep: MW239124.1__QQG32192.1__CkP1_0225__00225__D6-80
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 5.04e-01 100.0% 96.7%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 37.0 4.52e-01 100.0% 95.7%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 48.0 4.13e-01 88.9% 92.2%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 31.0 3.82e-01 92.6% 95.3%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 3.98e-01 100.0% 89.3%
2aqjA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 2.85e-01 92.6% 63.4%
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.56e-01 96.3% 48.8%
5uaoC00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 2.89e-01 96.3% 39.5%
4ntdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 4.20e-01 93.8% 97.3%
3fg2P02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 46.0 4.02e-01 97.5% 97.6%
4fk1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 4.01e-01 93.8% 97.3%
4akgA03 3.20.180.20 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3 0.53 33.0 3.31e-01 95.1% 60.2%
3ef6A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.88e-01 96.3% 99.2%
3vkgA03 3.20.180.20 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3 0.51 34.0 3.23e-01 95.1% 55.0%
5jciA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 43.0 3.72e-01 96.3% 96.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 41.0 4.39e-01 100.0% 68.6%
4944861 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 5.48e-01 97.5% 91.4%
4025709 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.62 28.0 3.06e-01 81.5% 47.7%
3263489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.50e-01 100.0% 87.7%
3954070 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.58 48.0 3.07e-01 92.6% 69.5%
3699229 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.56 34.0 2.16e-01 95.1% 10.2%
5047494 2003.1.2.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.56 48.0 2.94e-01 96.3% 84.8%
3698887 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.56 36.0 2.19e-01 95.1% 9.8%
3494785 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 35.0 3.87e-01 98.8% 80.0%
5001660 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 41.0 3.36e-01 77.8% 46.0%
4130494 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.55 40.0 3.22e-01 77.8% 95.2%
4964081 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 46.0 4.18e-01 96.3% 97.4%
3178002 2006.1.1.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.55 39.0 3.10e-01 76.5% 53.9%
1563361 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.53 45.0 3.11e-01 97.5% 67.0%
5045226 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 45.0 3.94e-01 96.3% 96.8%
5013291 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 46.0 3.95e-01 100.0% 75.6%
3726485 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 44.0 2.76e-01 95.1% 56.9%
4098926 244.1.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GIDA 0.52 39.0 2.42e-01 92.6% 13.8%
5011464 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.50 37.0 3.74e-01 84.0% 76.5%