←Back to structures

NC_070937.1__YP_010665756.1__PQB73_gp268__00038

Bact-Vir

NC_070937.1__YP_010665756.1__PQB73_gp268__00038

Identity

Accession:
NC_070937 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Nanhuvirus› Cronobacter_phage_LPCS28

TaxID: 2924885

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-87
PDB
Domain cluster: rep: NC_042067.1__YP_009618344.1__FDI95_gp175__00285__D1-60
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o75A03 2.60.40.1300 Mainly Beta › Sandwich › Immunoglobulin-like › Penicillin-binding protein Tp47, domain C 0.67 46.0 3.95e-01 70.6% 60.2%
5m59A06 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.66 45.0 4.09e-01 70.6% 62.5%
5dcaA08 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.65 44.0 4.08e-01 70.6% 64.5%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 45.0 4.28e-01 72.9% 62.7%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 40.0 4.17e-01 71.8% 72.7%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 44.0 3.86e-01 75.3% 63.5%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.91e-01 71.8% 71.2%
1n9pA00 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.60 54.0 4.11e-01 100.0% 56.9%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 42.0 3.53e-01 76.5% 43.3%
2q0zX03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.60 41.0 3.75e-01 71.8% 54.8%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.82e-01 71.8% 66.7%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.60 45.0 3.27e-01 81.2% 35.3%
8b0qA01 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.59 44.0 3.47e-01 78.8% 42.0%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 41.0 3.55e-01 74.1% 49.3%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.58 41.0 3.51e-01 74.1% 59.3%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.54e-01 71.8% 68.3%
3ue3A02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 37.0 3.17e-01 74.1% 39.4%
3im1A03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 40.0 3.63e-01 71.8% 55.7%
4jg5A01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.64e-01 87.1% 65.7%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 46.0 3.63e-01 88.2% 55.9%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.57 38.0 3.73e-01 70.6% 65.6%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 4.09e-01 83.5% 70.4%
1e4eB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 41.0 3.36e-01 76.5% 67.3%
5b71E00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 39.0 3.82e-01 72.9% 66.7%
3hr6A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.71e-01 83.5% 78.2%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 40.0 3.38e-01 76.5% 57.7%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 38.0 3.34e-01 72.9% 46.0%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.74e-01 89.4% 60.0%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.62e-01 89.4% 61.4%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.55 38.0 3.58e-01 72.9% 61.3%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.55 44.0 4.21e-01 89.4% 99.0%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 43.0 3.30e-01 90.6% 84.3%
1xp8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.51 27.0 3.16e-01 90.6% 71.7%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.56e-01 83.5% 74.8%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 3.58e-01 91.8% 55.7%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 3.23e-01 81.2% 46.6%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 3.20e-01 75.3% 53.5%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244401 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.75 52.0 4.69e-01 71.8% 57.4%
5080817 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 47.0 3.97e-01 70.6% 57.0%
3505613 11.1.1.236 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.68 46.0 4.43e-01 70.6% 68.0%
4996421 11.1.1.184 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.67 46.0 3.92e-01 71.8% 53.6%
5001345 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 45.0 3.02e-01 71.8% 20.9%
3599665 11.1.1.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.65 44.0 4.01e-01 70.6% 59.1%
3562310 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.65 42.0 3.94e-01 70.6% 54.3%
3860875 11.1.1.209 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17R_fnIII_D2 0.65 44.0 3.69e-01 70.6% 51.0%
5060440 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 4.10e-01 72.9% 62.7%
3737693 11.1.1.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.64 45.0 4.03e-01 72.9% 61.7%
4945418 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 3.77e-01 72.9% 59.3%
3350669 502.1.1.1 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.63 40.0 4.41e-01 98.8% 78.6%
3523555 11.1.1.560 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKAT_KLD 0.63 44.0 4.13e-01 72.9% 61.9%
5041727 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.62 44.0 3.66e-01 75.3% 61.3%
5062311 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 42.0 3.63e-01 70.6% 51.9%
3968712 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 43.0 4.48e-01 77.6% 78.8%
4567075 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.61 49.0 3.42e-01 88.2% 31.9%
4311623 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.61 43.0 3.70e-01 74.1% 58.5%
3280482 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.60 43.0 3.87e-01 75.3% 66.7%
4270283 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.60 42.0 3.72e-01 75.3% 60.2%
5033320 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 3.80e-01 71.8% 66.4%
5036165 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 38.0 4.11e-01 70.6% 78.6%
3261455 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 46.0 3.95e-01 83.5% 73.3%
4280109 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.59 42.0 3.71e-01 75.3% 64.0%
3730104 221.1.1.44 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.58 37.0 3.72e-01 83.5% 63.5%
4029586 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.58 42.0 3.49e-01 76.5% 60.0%
4435677 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.58 41.0 3.61e-01 75.3% 60.2%
5012588 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 37.0 3.78e-01 74.1% 67.5%
3852865 2492.1.1.23 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NAD2 0.58 41.0 3.29e-01 75.3% 42.2%
4106254 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.58 44.0 3.91e-01 82.4% 60.8%
3333290 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.58 41.0 3.24e-01 75.3% 55.6%
4371270 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 39.0 3.82e-01 72.9% 65.3%
3422969 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.55 44.0 3.97e-01 90.6% 63.0%
3421663 502.1.1.1 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.55 33.0 3.64e-01 96.5% 72.9%
3791212 11.1.1.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.54 38.0 3.20e-01 72.9% 45.5%
3282710 2492.1.1.35 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 0.54 38.0 3.16e-01 75.3% 53.3%
3510514 10.32.1.172 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DDR1-2_DS-like 0.53 38.0 3.08e-01 76.5% 40.6%
4380266 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 40.0 3.02e-01 84.7% 55.7%
3782638 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.52 41.0 3.27e-01 87.1% 51.9%
3958207 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 40.0 3.50e-01 89.4% 52.1%
3592654 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 33.0 3.44e-01 83.5% 68.8%
3472406 5.1.12.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.52 38.0 2.69e-01 80.0% 85.7%
3721982 304.14.1.0 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.52 36.0 3.52e-01 71.8% 82.1%
3515680 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.51 39.0 3.29e-01 83.5% 71.6%