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NC_070937.1__YP_010665762.1__PQB73_gp262__00044

Bact-Vir

NC_070937.1__YP_010665762.1__PQB73_gp262__00044

Identity

Accession:
NC_070937 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Nanhuvirus› Cronobacter_phage_LPCS28

TaxID: 2924885

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-112
PDB
Domain cluster: rep: OR515478.1__WNL63121.1__X__00117__D38-116
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 44.0 5.15e-01 70.1% 76.8%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.77 56.0 4.77e-01 75.3% 60.9%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 43.0 5.00e-01 75.3% 76.1%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.75 55.0 4.75e-01 76.3% 64.8%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 44.0 5.42e-01 71.1% 93.5%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 43.0 5.18e-01 71.1% 90.5%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 42.0 5.25e-01 73.2% 94.9%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 4.96e-01 76.3% 63.2%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 53.0 4.62e-01 79.4% 67.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 44.0 5.06e-01 71.1% 97.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 39.0 4.89e-01 89.7% 98.3%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 40.0 4.95e-01 72.2% 100.0%
5yh4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 45.0 3.71e-01 73.2% 98.9%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.03e-01 74.2% 64.9%
3tc2B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 44.0 3.63e-01 74.2% 100.0%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.61 42.0 4.17e-01 72.2% 76.9%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.32e-01 73.2% 86.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.82e-01 84.5% 97.4%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.59 35.0 4.30e-01 87.6% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.25e-01 73.2% 83.1%
1xxmC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 36.0 4.04e-01 91.8% 83.8%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 4.18e-01 84.5% 87.2%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.73e-01 80.4% 82.7%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.30e-01 90.7% 88.9%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 36.0 2.86e-01 71.1% 78.8%
1io1A03 2.30.220.10 Mainly Beta › Roll › f41 fragment of flagellin, C-terminal domain › f41 fragment of flagellin, C-terminal domain 0.51 35.0 3.55e-01 71.1% 94.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3190402 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 54.0 4.62e-01 73.2% 64.2%
3709279 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.26e-01 70.1% 80.0%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.72 42.0 4.88e-01 73.2% 80.0%
3781440 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 52.0 5.69e-01 75.3% 100.0%
3595169 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.71e-01 84.5% 98.6%
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 47.0 5.49e-01 71.1% 94.3%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 43.0 5.18e-01 71.1% 96.8%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.68 42.0 5.21e-01 71.1% 100.0%
3738332 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.68 55.0 4.54e-01 85.6% 56.5%
3637508 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.67 40.0 4.83e-01 89.7% 89.2%
5038340 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 44.0 4.98e-01 74.2% 88.0%
4929472 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 5.14e-01 73.2% 90.0%
3492757 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 5.35e-01 73.2% 100.0%
3917376 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.66 45.0 5.17e-01 70.1% 100.0%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 46.0 4.94e-01 72.2% 89.4%
3189199 109.1.1.35 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › PF25907 0.65 49.0 3.51e-01 80.4% 28.7%
3356605 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 45.0 4.74e-01 72.2% 90.0%
4283343 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 45.0 4.89e-01 72.2% 91.3%
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 42.0 4.62e-01 70.1% 81.2%
3793656 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.64 45.0 3.91e-01 92.8% 49.0%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 43.0 4.43e-01 70.1% 86.3%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 43.0 4.31e-01 70.1% 69.0%
4679625 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 38.0 4.66e-01 95.9% 98.3%
4958339 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 47.0 4.55e-01 100.0% 70.0%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.28e-01 71.1% 74.4%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.61 43.0 4.66e-01 72.2% 87.5%
3519774 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.62e-01 97.9% 78.1%
3210897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 4.29e-01 72.2% 83.5%
3576219 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.58 40.0 3.51e-01 72.2% 69.7%
3997949 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 45.0 4.68e-01 96.9% 91.1%
3448975 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.55 36.0 4.15e-01 85.6% 98.5%
3244430 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 47.0 4.63e-01 91.8% 87.6%
3502085 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.84e-01 72.2% 78.0%
3182025 4.1.1.475 ↗ beta barrels › SH3 › SH3 › SH3 › PF26640 0.54 43.0 3.89e-01 86.6% 79.3%
3866571 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.54 47.0 3.07e-01 97.9% 95.1%
3473464 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.54 48.0 4.06e-01 100.0% 65.9%
3342304 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 4.00e-01 95.9% 74.8%
3804236 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 4.07e-01 95.9% 82.9%
3893808 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.52 45.0 3.15e-01 95.9% 95.6%
1905738 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.50 45.0 3.93e-01 100.0% 85.8%