Back to structures

NC_070937.1__YP_010665809.1__PQB73_gp215__00091

Bact-Vir

NC_070937.1__YP_010665809.1__PQB73_gp215__00091

Identity

Accession:
NC_070937 ↗
Kingdom:
phage

Quality

54.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 99-179
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 6.31e-01 100.0% 96.3%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 5.56e-01 96.3% 76.5%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.69 56.0 5.68e-01 96.3% 88.9%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 5.13e-01 98.8% 69.9%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.44e-01 96.3% 80.0%
3bz6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 5.52e-01 96.3% 82.2%
1zelA01 3.90.56.20 Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › replication protein C, winged helix domain 0.67 48.0 4.58e-01 95.1% 63.3%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 5.04e-01 100.0% 77.8%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 5.51e-01 98.8% 97.2%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 57.0 5.57e-01 95.1% 89.7%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.13e-01 95.1% 46.1%
2mbfA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 5.54e-01 100.0% 83.5%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 56.0 5.34e-01 98.8% 81.1%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 5.04e-01 96.3% 78.0%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 5.29e-01 100.0% 97.3%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.70e-01 100.0% 72.8%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 44.0 4.60e-01 92.6% 84.0%
1bjtA05 3.90.199.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 0.60 52.0 3.78e-01 100.0% 40.2%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.60 52.0 4.94e-01 100.0% 93.9%
1bjfA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 43.0 4.20e-01 77.8% 77.5%
2m1bA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.04e-01 98.8% 57.8%
2r2iA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 42.0 4.18e-01 77.8% 73.6%
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 41.0 4.44e-01 86.4% 95.4%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 44.0 4.13e-01 84.0% 74.3%
4wzsB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.57 35.0 3.20e-01 88.9% 44.2%
3zq7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.21e-01 95.1% 71.3%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 42.0 4.21e-01 100.0% 79.3%
2wa0A02 1.10.10.1210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH2 motif 0.56 44.0 4.07e-01 98.8% 64.6%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.56 39.0 4.29e-01 95.1% 95.2%
2be4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 44.0 4.47e-01 98.8% 90.1%
3dplC02 3.30.230.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 0.55 49.0 3.85e-01 100.0% 72.8%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.55 40.0 4.07e-01 85.2% 80.2%
2be4A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 41.0 4.05e-01 82.7% 85.2%
2nraC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 3.82e-01 97.5% 66.7%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.53 46.0 4.50e-01 100.0% 92.0%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 42.0 4.27e-01 98.8% 95.0%
3sykA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 35.0 3.41e-01 72.8% 63.3%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 35.0 3.50e-01 91.4% 69.0%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940719 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 59.0 4.76e-01 97.5% 43.1%
5033207 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 60.0 5.15e-01 96.3% 54.4%
3924465 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 5.72e-01 96.3% 67.5%
4996559 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 59.0 6.15e-01 96.3% 94.7%
3648804 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 63.0 5.66e-01 96.3% 72.2%
4081838 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 59.0 6.14e-01 96.3% 94.7%
4947850 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 5.98e-01 98.8% 79.0%
3927517 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 62.0 5.76e-01 96.3% 76.0%
3358560 101.1.2.509 alpha arrays › HTH › HTH › winged helix domain › PF25879 0.72 56.0 5.75e-01 95.1% 90.7%
4358890 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 63.0 5.59e-01 96.3% 67.8%
4588402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 6.03e-01 97.5% 96.0%
4109840 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 61.0 5.70e-01 96.3% 76.0%
5048841 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 63.0 5.48e-01 96.3% 65.8%
3625612 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 60.0 5.63e-01 96.3% 75.0%
4928669 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 60.0 5.51e-01 96.3% 71.4%
3987997 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.98e-01 100.0% 97.3%
4032499 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.89e-01 98.8% 96.0%
4966192 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 62.0 5.49e-01 96.3% 68.7%
4962870 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 61.0 5.29e-01 96.3% 62.6%
3925904 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.70 63.0 4.90e-01 100.0% 65.1%
4373647 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 61.0 5.37e-01 97.5% 65.0%
3739861 101.1.2.198 alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.70 61.0 5.41e-01 96.3% 72.2%
3191841 101.1.2.533 alpha arrays › HTH › HTH › winged helix domain › WH_CYT4 0.70 54.0 5.25e-01 100.0% 74.4%
3255111 101.1.2.397 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.70 51.0 5.51e-01 95.1% 96.9%
3392763 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 56.0 5.60e-01 100.0% 84.7%
4983039 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 60.0 5.57e-01 96.3% 76.8%
5050129 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 60.0 5.44e-01 96.3% 72.7%
4974161 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 60.0 5.19e-01 97.5% 62.9%
4990676 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 60.0 5.43e-01 96.3% 71.8%
3254841 101.1.2.198 alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.69 59.0 5.41e-01 97.5% 73.3%
5071551 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.30e-01 98.8% 76.8%
4672256 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 60.0 5.34e-01 98.8% 68.7%
5000349 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 58.0 5.12e-01 98.8% 64.2%
3946676 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 61.0 5.49e-01 98.8% 72.7%
None 0.68 57.0 5.38e-01 97.5% 76.0%
4979490 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 58.0 5.16e-01 97.5% 65.0%
5011183 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 59.0 5.35e-01 98.8% 71.8%
4982553 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 52.0 4.82e-01 96.3% 64.8%
5079453 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 51.0 4.65e-01 98.8% 60.0%
3649376 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 57.0 4.67e-01 98.8% 50.7%
4946714 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.68 61.0 5.89e-01 100.0% 92.2%
3875839 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.67 56.0 5.07e-01 98.8% 66.1%
4013574 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 5.22e-01 96.3% 69.6%
4173782 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.67 59.0 5.24e-01 97.5% 68.7%
3276654 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.67 58.0 4.00e-01 98.8% 27.5%
4945942 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.14e-01 98.8% 70.0%
3225058 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.67 55.0 3.72e-01 100.0% 23.4%
3744213 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.67 56.0 4.75e-01 100.0% 55.0%
3414623 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.67 54.0 3.72e-01 100.0% 24.7%
3552400 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.66 54.0 3.74e-01 100.0% 25.5%
3744355 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.66 58.0 5.06e-01 98.8% 76.0%
5049515 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 57.0 5.14e-01 98.8% 68.7%
4943074 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.66 59.0 4.82e-01 100.0% 58.7%
5027116 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 57.0 5.13e-01 97.5% 69.6%
4284507 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 58.0 5.35e-01 98.8% 76.2%
3958793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 5.38e-01 91.4% 95.7%
3841412 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.66 53.0 4.82e-01 100.0% 64.3%
1519214 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 55.0 5.14e-01 98.8% 74.5%
4487383 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 57.0 5.21e-01 98.8% 74.5%
5046227 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 5.00e-01 96.3% 80.0%
4955909 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 57.0 5.15e-01 97.5% 71.8%
3508000 101.1.2.466 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C 0.65 49.0 5.28e-01 95.1% 100.0%
4958024 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 51.0 4.91e-01 95.1% 73.7%
3598367 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.89e-01 100.0% 75.3%
3797700 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 57.0 5.33e-01 98.8% 80.0%
3237013 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.64 57.0 4.87e-01 98.8% 61.5%
5065308 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 56.0 4.96e-01 98.8% 67.5%
5003874 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 56.0 4.94e-01 98.8% 66.7%
4961270 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 55.0 5.11e-01 97.5% 76.2%
4972208 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.64 57.0 5.55e-01 100.0% 90.0%
3176995 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.64 50.0 4.97e-01 100.0% 83.3%
4975513 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 55.0 5.00e-01 97.5% 71.8%
5072071 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 4.93e-01 96.3% 90.0%
4027206 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 4.63e-01 100.0% 57.9%
3383404 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.63 51.0 4.74e-01 98.8% 71.2%
5071964 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.97e-01 98.8% 94.3%
3268398 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.62 48.0 4.13e-01 85.2% 51.1%
5045098 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.62 52.0 5.07e-01 97.5% 85.6%
3772634 101.1.2.397 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.62 47.0 4.74e-01 100.0% 85.0%
5073218 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.61e-01 97.5% 76.7%
4024221 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.61 44.0 4.13e-01 92.6% 62.0%
4928210 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 4.42e-01 96.3% 70.5%
3744167 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.11e-01 96.3% 53.6%
3415127 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.58 39.0 3.93e-01 87.7% 68.2%
3247967 101.1.1.28 alpha arrays › HTH › HTH › Three-helical HTH › SWIRM 0.57 43.0 4.18e-01 100.0% 74.4%
4927328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.12e-01 100.0% 72.6%
3857154 101.1.2.151 alpha arrays › HTH › HTH › winged helix domain › COR 0.56 48.0 4.30e-01 100.0% 70.0%
4996581 101.1.2.750 alpha arrays › HTH › HTH › winged helix domain › PF27374 0.56 48.0 4.38e-01 100.0% 71.3%
3472509 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 45.0 4.36e-01 100.0% 78.9%
3620809 604.1.1.145 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › EF-hand_6, EF-hand_7 0.53 39.0 3.72e-01 92.6% 66.3%
3224616 604.1.1.230 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › EFhand_Ca_insen, EF-hand_6, EF-hand_7 0.53 38.0 3.15e-01 92.6% 40.0%
3720237 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 36.0 3.75e-01 92.6% 78.7%
3479694 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 39.0 3.91e-01 92.6% 77.6%
4028918 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.50 37.0 2.66e-01 79.0% 50.4%