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NC_070937.1__YP_010665847.1__PQB73_gp177__00129

Bact-Vir

NC_070937.1__YP_010665847.1__PQB73_gp177__00129

Identity

Accession:
NC_070937 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Nanhuvirus› Cronobacter_phage_LPCS28

TaxID: 2924885

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-72
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26887.1 best Phage_T4_End_IV 35.4 1.30e-08 100.0% 29.1%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.77 58.0 4.63e-01 79.2% 76.9%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.74 53.0 5.03e-01 76.4% 65.5%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 51.0 4.93e-01 72.2% 69.6%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.69 49.0 4.59e-01 75.0% 71.4%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.69 43.0 3.66e-01 80.6% 37.4%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.67 42.0 3.72e-01 76.4% 43.0%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.66 48.0 4.36e-01 77.8% 57.6%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 40.0 4.43e-01 83.3% 92.5%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 40.0 3.31e-01 70.8% 69.9%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 45.0 2.87e-01 84.7% 49.5%
2zm5A02 1.10.20.140 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.58 40.0 4.01e-01 70.8% 86.1%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.57 40.0 4.21e-01 77.8% 88.3%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.57 41.0 3.44e-01 79.2% 43.2%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.55 40.0 4.27e-01 77.8% 96.9%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.55 42.0 3.90e-01 86.1% 83.5%
7z67A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 38.0 2.73e-01 73.6% 52.8%
1fkaD01 1.10.1050.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › Ribosomal protein S4/S9, N-terminal domain 0.52 29.0 3.05e-01 83.3% 50.7%
2rrdA00 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.52 42.0 3.87e-01 95.8% 98.0%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 37.0 3.93e-01 81.9% 88.7%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 37.0 3.68e-01 97.2% 71.8%
3kdrA01 1.20.1270.210 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 36.0 3.23e-01 76.4% 50.9%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.50 35.0 3.75e-01 95.8% 82.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053903 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 55.0 4.68e-01 83.3% 49.2%
3290367 3470.1.1.0 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.68 52.0 5.42e-01 83.3% 100.0%
5061438 5067.1.1.4 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL 0.66 51.0 3.49e-01 83.3% 60.8%
5068349 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.64 45.0 3.85e-01 75.0% 90.0%
4954003 5079.1.1.1 ↗ alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE 0.63 49.0 3.73e-01 86.1% 83.3%
5062284 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.63 43.0 3.63e-01 70.8% 90.4%
3512559 192.1.1.37 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.63 43.0 4.52e-01 73.6% 84.6%
3830212 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.62 47.0 3.05e-01 83.3% 27.3%
3575990 5067.1.1.3 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.62 46.0 3.01e-01 81.9% 41.7%
5000698 604.38.1.0 ↗ alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle 0.60 39.0 3.37e-01 91.7% 45.7%
3913174 109.4.1.448 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4559 0.58 45.0 3.13e-01 84.7% 53.7%
3904014 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.58 50.0 3.61e-01 97.2% 92.9%
3994324 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 41.0 2.66e-01 76.4% 27.3%
2777335 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.56 43.0 3.59e-01 81.9% 88.8%
5058468 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.56 39.0 3.86e-01 73.6% 69.3%
4952853 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.55 38.0 3.51e-01 72.2% 65.3%
3401272 174.1.1.29 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728 0.55 46.0 3.49e-01 98.6% 39.4%
4991104 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.54 45.0 3.02e-01 95.8% 93.0%
3591291 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.53 45.0 3.39e-01 100.0% 72.9%
4026070 5071.1.1.1 ↗ alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › UCR_hinge 0.52 37.0 3.84e-01 81.9% 79.4%
5057325 604.39.1.3 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS 0.52 45.0 3.37e-01 98.6% 74.7%
4826095 5067.1.1.5 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing 0.51 37.0 3.45e-01 79.2% 67.7%
D2 medium residues 73-190
PDB
Domain cluster: rep: IMGVR_UViG_3300037809_000264-3300037809-Ga0427884_001405_828_1355__D68-175
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26887.1 best Phage_T4_End_IV 85.5 5.60e-24 87.3% 60.9%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rznA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 52.0 4.80e-01 100.0% 74.0%
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 40.0 4.24e-01 72.9% 84.3%
4narA01 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.56 45.0 3.52e-01 87.3% 85.5%
4oc8A01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.54 48.0 3.96e-01 100.0% 82.8%
4q20A02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 36.0 3.40e-01 70.3% 90.6%
3pc3A03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 41.0 3.84e-01 83.1% 67.4%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.52 39.0 4.03e-01 84.7% 84.4%
3ieyA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 35.0 3.77e-01 73.7% 82.0%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.51 46.0 3.33e-01 100.0% 59.3%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.50 38.0 3.02e-01 82.2% 42.5%
6sshA01 3.40.50.11210 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP 0.50 36.0 3.15e-01 100.0% 47.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961857 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.56 43.0 4.03e-01 84.7% 66.9%
3523166 2004.1.1.78 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rap_GAP 0.55 39.0 3.21e-01 100.0% 39.1%
3716110 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 44.0 3.75e-01 84.7% 62.7%
4989906 2008.1.1.159 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 0.54 41.0 3.18e-01 80.5% 41.5%
3653954 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.53 42.0 3.34e-01 83.9% 83.3%
3843925 2004.1.1.78 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rap_GAP 0.53 38.0 3.24e-01 100.0% 45.1%
4444321 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.52 41.0 3.42e-01 84.7% 80.5%
3954912 2003.1.7.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.52 36.0 3.14e-01 94.9% 44.2%
4576982 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.52 40.0 3.26e-01 83.1% 76.2%
5057719 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 42.0 3.95e-01 84.7% 76.4%
4929251 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.51 40.0 3.47e-01 83.1% 53.7%
3569802 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 38.0 3.26e-01 79.7% 53.3%
3182737 2007.6.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.50 42.0 2.94e-01 91.5% 96.2%