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NC_070937.1__YP_010665893.1__PQB73_gp131__00175

Bact-Vir

NC_070937.1__YP_010665893.1__PQB73_gp131__00175

Identity

Accession:
NC_070937 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Nanhuvirus› Cronobacter_phage_LPCS28

TaxID: 2924885

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-131
PDB
Domain cluster: rep: qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00207__D32-129
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2khiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 32.0 3.60e-01 93.7% 67.4%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.55 33.0 3.95e-01 79.4% 87.2%
1vwxd00 3.10.440.10 Alpha Beta › Roll › Ribosomal Protein L31e; Chain: W; › Ribosomal protein L31 0.55 37.0 3.95e-01 99.2% 80.4%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.54 28.0 3.46e-01 82.5% 82.2%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 31.0 3.56e-01 96.0% 77.5%
2vnuD02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 27.0 3.28e-01 82.5% 74.0%
1y14D02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 32.0 3.72e-01 84.9% 85.1%
1luzA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 30.0 3.42e-01 94.4% 76.5%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 24.0 3.24e-01 79.4% 88.3%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 32.0 3.67e-01 92.9% 86.8%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 29.0 3.15e-01 96.0% 64.8%
3lq9A00 3.90.470.40 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › RTP801-like 0.51 41.0 4.12e-01 88.1% 98.4%
4u7aA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.69e-01 88.9% 26.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051049 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 45.0 4.54e-01 91.3% 70.4%
3278065 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.65 49.0 5.26e-01 80.2% 90.9%
5053568 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 40.0 3.91e-01 91.3% 61.5%
3743702 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 41.0 4.48e-01 91.3% 84.8%
4314498 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 45.0 3.68e-01 84.9% 86.4%
5083897 4312.1.1.1 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin 0.56 41.0 4.52e-01 81.0% 95.9%
3214896 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 29.0 3.07e-01 83.3% 56.4%
1214898 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 29.0 3.65e-01 71.4% 85.5%
3497269 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 35.0 3.70e-01 93.7% 72.7%
3263391 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.54 34.0 3.65e-01 83.3% 71.8%
4364052 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 24.0 3.07e-01 80.2% 70.0%
3209511 2.1.1.219 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 0.53 27.0 3.05e-01 82.5% 61.1%
5000723 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 35.0 3.65e-01 93.7% 70.8%
5052577 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 4.10e-01 88.9% 80.8%
3301699 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 33.0 3.55e-01 79.4% 75.2%
3517217 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 39.0 2.82e-01 85.7% 26.9%
4498774 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 23.0 2.99e-01 81.0% 75.4%
3817465 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 32.0 3.55e-01 77.8% 79.0%
3273301 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 30.0 3.57e-01 77.0% 87.1%
3472174 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.77e-01 86.5% 37.1%
3496962 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 29.0 3.30e-01 93.7% 75.6%
5049764 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 38.0 3.98e-01 90.5% 89.6%
3485537 5.1.4.223 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.50 41.0 2.73e-01 87.3% 29.6%