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NC_070937.1__YP_010665896.1__PQB73_gp128__00178

Bact-Vir

NC_070937.1__YP_010665896.1__PQB73_gp128__00178

Identity

Accession:
NC_070937 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Nanhuvirus› Cronobacter_phage_LPCS28

TaxID: 2924885

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-80
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cqxC00 1.20.58.890 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 36.0 3.60e-01 96.2% 40.7%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.82 41.0 3.91e-01 75.6% 42.9%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.73 36.0 4.14e-01 83.3% 63.8%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.72 46.0 3.61e-01 78.2% 32.3%
3op0A01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.70 47.0 3.84e-01 82.1% 39.7%
4doyA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.69 48.0 3.56e-01 79.5% 30.6%
7dwqL01 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.67 46.0 3.89e-01 70.5% 98.4%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 40.0 4.44e-01 78.2% 74.6%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.66 44.0 4.10e-01 80.8% 56.4%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.66 39.0 3.81e-01 78.2% 53.4%
3khkB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.63 43.0 3.32e-01 71.8% 34.6%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.62 42.0 3.48e-01 78.2% 40.6%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.61 47.0 4.35e-01 82.1% 75.8%
2g5cB02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.61 51.0 4.60e-01 93.6% 82.7%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 38.0 4.02e-01 75.6% 70.4%
3b1fA02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.61 51.0 4.55e-01 93.6% 82.0%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.59 43.0 3.99e-01 76.9% 62.7%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.59 44.0 4.18e-01 82.1% 68.5%
6cgaC02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 42.0 4.27e-01 79.5% 75.6%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.56 41.0 4.23e-01 75.6% 82.4%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.55 44.0 3.92e-01 89.7% 79.6%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 42.0 3.93e-01 85.9% 100.0%
3dytA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.53 41.0 3.07e-01 82.1% 51.6%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 47.0 4.06e-01 98.7% 100.0%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 46.0 4.29e-01 97.4% 100.0%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.52 45.0 3.83e-01 94.9% 65.9%
3tc1B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 45.0 3.09e-01 98.7% 63.3%
2r0rB00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.51 37.0 3.74e-01 75.6% 78.2%
3hv0A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.51 41.0 3.59e-01 97.4% 58.9%
2mb9A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 37.0 3.40e-01 78.2% 84.9%
1wpbB02 1.10.3190.10 Mainly Alpha › Orthogonal Bundle › yfbu gene product, domain 2 › yfbu gene product, domain 2 0.51 36.0 3.26e-01 75.6% 58.0%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 40.0 3.48e-01 83.3% 73.3%
2wauA02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 42.0 3.65e-01 91.0% 93.4%
2gruA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.51 41.0 3.09e-01 89.7% 56.3%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.50 39.0 3.87e-01 83.3% 84.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041499 633.6.1.1 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.76 49.0 3.81e-01 78.2% 34.0%
4887185 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.72 53.0 4.73e-01 100.0% 56.6%
3690565 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.70 49.0 4.31e-01 82.1% 50.9%
3263287 150.7.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE 0.70 44.0 4.24e-01 78.2% 58.8%
3280601 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.69 39.0 3.38e-01 100.0% 38.3%
5022685 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.68 43.0 4.80e-01 75.6% 83.3%
3789486 150.5.1.88 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Far-17a_AIG1 0.67 41.0 3.42e-01 94.9% 38.4%
3805417 5038.2.1.1 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.65 38.0 3.13e-01 87.2% 31.4%
3416428 633.6.1.8 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.64 46.0 3.44e-01 78.2% 32.2%
3254551 386.1.1.10 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › MAT1 0.64 51.0 4.73e-01 83.3% 77.9%
3611330 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.64 41.0 4.14e-01 100.0% 65.0%
3491886 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 46.0 4.71e-01 76.9% 85.3%
3423798 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.62 55.0 4.15e-01 97.4% 95.7%
3735658 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.60 43.0 3.70e-01 78.2% 49.6%
3212426 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.60 43.0 3.46e-01 74.4% 42.8%
4053952 3681.1.1.0 ↗ a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.59 46.0 4.10e-01 96.2% 60.0%
3987595 5042.1.1.1 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.59 34.0 3.74e-01 78.2% 70.3%
3709861 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 46.0 3.28e-01 82.1% 54.0%
3648687 604.12.1.89 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › CDP-OH_P_transf 0.57 45.0 4.21e-01 84.6% 94.7%
3802382 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.56 51.0 4.03e-01 98.7% 61.3%
3906129 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 45.0 3.81e-01 87.2% 96.8%
3962381 150.5.1.50 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › EspA_EspE 0.55 41.0 4.13e-01 78.2% 82.5%
4628387 616.1.1.1 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 0.55 40.0 3.88e-01 78.2% 68.2%
3625044 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 40.0 3.66e-01 78.2% 66.7%
3739454 192.5.1.38 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 0.54 41.0 3.76e-01 100.0% 61.0%
3223244 150.1.1.104 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Piezo_THU9_anchor 0.54 45.0 3.70e-01 92.3% 72.4%
3294780 3755.3.1.375 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF4079 0.53 42.0 3.34e-01 83.3% 94.0%
3471656 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.53 39.0 3.90e-01 79.5% 85.0%
3460430 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.52 42.0 3.35e-01 87.2% 44.5%
3207999 3660.1.1.4 ↗ alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › DUF7785 0.52 34.0 3.15e-01 83.3% 54.7%
3310956 630.1.1.0 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain 0.52 44.0 3.58e-01 93.6% 99.3%
3960611 3326.1.1.0 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA 0.52 39.0 3.21e-01 78.2% 49.2%
4119921 1128.1.1.23 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Ycf66_N 0.51 46.0 4.32e-01 98.7% 97.9%
3575376 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.51 33.0 3.20e-01 82.1% 55.8%
3821440 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 36.0 3.22e-01 76.9% 53.0%