←Back to structures
NC_070937.1__YP_010665972.1__PQB73_gp052__00254
Bact-VirNC_070937.1__YP_010665972.1__PQB73_gp052__00254
Identity
- Accession:
- NC_070937 ↗
- Kingdom:
- phage
Quality
81.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Nanhuvirus›
Cronobacter_phage_LPCS28
TaxID: 2924885
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-76
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00154__D2-61
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.63 | 52.0 | 4.79e-01 | 90.7% | 77.3% |
| 7v8fB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 51.0 | 4.82e-01 | 100.0% | 73.9% |
| 2vlaA01 | 1.10.10.2080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 36.0 | 3.63e-01 | 78.7% | 59.0% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.53 | 49.0 | 3.91e-01 | 100.0% | 59.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3666975 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.71 | 54.0 | 5.19e-01 | 98.7% | 70.6% |
| 3928741 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.71 | 52.0 | 5.00e-01 | 100.0% | 68.2% |
| 3966922 | 102.1.3.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › PF27805 | 0.64 | 43.0 | 3.61e-01 | 80.0% | 39.8% |
| 3385531 | 377.1.1.31 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS | 0.58 | 34.0 | 4.07e-01 | 90.7% | 95.6% |
| 4562058 | 377.1.1.31 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS | 0.55 | 32.0 | 3.82e-01 | 89.3% | 93.3% |
| 3485417 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.53 | 44.0 | 2.88e-01 | 93.3% | 24.6% |
| 3697351 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.52 | 43.0 | 3.12e-01 | 93.3% | 68.6% |