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NC_070942.1__YP_010666413.1__PQB78_gp29__00029
Bact-VirNC_070942.1__YP_010666413.1__PQB78_gp29__00029
Identity
- Accession:
- NC_070942 ↗
- Kingdom:
- phage
Quality
78.5
mean pLDDT
Taxonomy
TaxID: 2591069
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-60
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.85 | 63.0 | 5.11e-01 | 77.6% | 47.5% |
| 4bwrA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.77 | 56.0 | 3.26e-01 | 77.6% | 9.9% |
| 8an5A01 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.71 | 60.0 | 4.25e-01 | 100.0% | 35.9% |
| 1hypA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.70 | 58.0 | 5.36e-01 | 94.8% | 82.7% |
| 3egqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 59.0 | 4.30e-01 | 100.0% | 56.7% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.68 | 57.0 | 5.04e-01 | 94.8% | 83.5% |
| 1bwoA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.67 | 56.0 | 4.96e-01 | 100.0% | 78.9% |
| 4evfA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.67 | 56.0 | 5.29e-01 | 100.0% | 86.5% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.65 | 45.0 | 3.57e-01 | 74.1% | 57.1% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 46.0 | 3.58e-01 | 82.8% | 49.7% |
| 3mx3A01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 53.0 | 3.75e-01 | 100.0% | 58.6% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.60 | 45.0 | 4.36e-01 | 84.5% | 79.1% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.58 | 48.0 | 3.50e-01 | 100.0% | 66.0% |
| 1dl2A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 48.0 | 2.88e-01 | 100.0% | 19.2% |
| 4f92B10 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.57 | 44.0 | 3.37e-01 | 86.2% | 72.0% |
| 2ibdA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 48.0 | 3.72e-01 | 100.0% | 76.2% |
| 1epuA03 | 1.25.40.60 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 45.0 | 3.57e-01 | 89.7% | 44.4% |
| 8dtqA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 47.0 | 4.24e-01 | 93.1% | 82.9% |
| 2ofyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.56 | 42.0 | 3.99e-01 | 81.0% | 84.3% |
| 1a31A04 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.56 | 44.0 | 4.01e-01 | 89.7% | 66.3% |
| 5tqbB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 46.0 | 2.96e-01 | 100.0% | 25.3% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 43.0 | 3.26e-01 | 89.7% | 75.8% |
| 3he0B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 44.0 | 3.31e-01 | 100.0% | 55.1% |
| 2j16A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 45.0 | 3.62e-01 | 100.0% | 67.7% |
| 3m71A00 | 1.50.10.150 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Voltage-dependent anion channel | 0.54 | 44.0 | 2.92e-01 | 100.0% | 33.4% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 46.0 | 3.30e-01 | 100.0% | 66.1% |
| 5af7A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 43.0 | 3.66e-01 | 98.3% | 96.4% |
| 5w36B01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.52 | 37.0 | 2.95e-01 | 79.3% | 95.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039554 | 109.2.1.12 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_65m | 0.73 | 63.0 | 3.50e-01 | 100.0% | 13.1% |
| 3580719 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.72 | 63.0 | 5.59e-01 | 100.0% | 80.0% |
| 3259882 | 109.4.1.134 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPIN90_LRD | 0.69 | 61.0 | 3.75e-01 | 100.0% | 18.1% |
| 3339530 | 101.1.22.1 ↗ | alpha arrays › HTH › HTH › double HTH › HTH_RNase_II | 0.60 | 49.0 | 4.18e-01 | 100.0% | 78.2% |
| 3598243 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.59 | 41.0 | 4.00e-01 | 72.4% | 70.8% |
| 3270678 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.59 | 43.0 | 2.63e-01 | 77.6% | 13.3% |
| 2723618 | 109.4.1.142 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K | 0.58 | 47.0 | 4.02e-01 | 100.0% | 55.0% |
| 4379330 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.57 | 44.0 | 4.41e-01 | 96.6% | 86.7% |
| 4981336 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.56 | 47.0 | 4.35e-01 | 100.0% | 73.3% |
| 3935113 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.54 | 41.0 | 3.12e-01 | 89.7% | 64.1% |
| 3422489 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.54 | 39.0 | 3.11e-01 | 77.6% | 36.8% |
| 53487 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.52 | 42.0 | 3.50e-01 | 100.0% | 76.6% |