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NC_070944.1__YP_010666633.1__PQB80_gp054__00054

Bact-Vir

NC_070944.1__YP_010666633.1__PQB80_gp054__00054

Identity

Accession:
NC_070944 ↗
Kingdom:
phage

Quality

95.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mudcatvirus› Arthrobacter_phage_JEGGS

TaxID: 2591110

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-39
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eg5B01 1.10.20.40 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Formin, diaphanous GTPase-binding domain 0.78 64.0 6.29e-01 100.0% 100.0%
2lfhA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.73 55.0 4.70e-01 100.0% 48.5%
1r3dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.68 49.0 2.93e-01 94.6% 10.9%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.67 45.0 4.35e-01 89.2% 63.4%
3juwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 53.0 3.50e-01 100.0% 21.0%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 49.0 3.90e-01 94.6% 38.3%
4xomB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 44.0 2.75e-01 86.5% 13.7%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.04e-01 86.5% 55.6%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 44.0 3.57e-01 83.8% 55.3%
6sziB01 3.20.20.470 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase 0.59 51.0 2.94e-01 100.0% 11.9%
3ocpB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 48.0 3.37e-01 97.3% 79.7%
3pntA01 1.10.10.1660 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nicotine adenine dinucleotide glycohydrolase, helical linker domain 0.57 43.0 3.68e-01 97.3% 74.7%
2mr9A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 42.0 4.02e-01 89.2% 75.0%
2h8pC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 44.0 3.93e-01 100.0% 63.2%
1wxqA02 1.10.8.470 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.50 44.0 3.33e-01 100.0% 66.7%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4283877 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.73 52.0 3.36e-01 94.6% 17.5%
4170537 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.72 56.0 3.82e-01 94.6% 24.6%
3473995 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.70 54.0 4.58e-01 100.0% 50.8%
3451236 397.4.1.3 ↗ few secondary structure elements › Toxic hairpin › VhTI-like › VhTI-like › PF31266 0.63 46.0 4.35e-01 83.8% 64.4%
3652698 213.1.1.72 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 0.60 50.0 3.12e-01 94.6% 17.2%
3710904 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 49.0 3.40e-01 100.0% 50.7%
3966675 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 47.0 2.92e-01 100.0% 74.2%