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NC_070946.1__YP_010666808.1__PQB82_gp29__00029
Bact-VirNC_070946.1__YP_010666808.1__PQB82_gp29__00029
Identity
- Accession:
- NC_070946 ↗
- Kingdom:
- phage
Quality
71.8
mean pLDDT
Taxonomy
TaxID: 2867479
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-82
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dbzA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.60 | 45.0 | 3.30e-01 | 79.4% | 56.0% |
| 2h2yA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.59 | 41.0 | 3.45e-01 | 73.5% | 42.2% |
| 3ri6A01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 42.0 | 2.97e-01 | 76.5% | 86.1% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.59 | 44.0 | 4.22e-01 | 83.8% | 77.5% |
| 3n7zA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 40.0 | 3.25e-01 | 85.3% | 39.4% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.56 | 40.0 | 2.82e-01 | 77.9% | 40.8% |
| 4kqdB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 37.0 | 3.12e-01 | 70.6% | 47.4% |
| 3ey5A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 36.0 | 2.84e-01 | 70.6% | 43.2% |
| 2fkcA01 | 3.40.1350.40 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 48.0 | 4.06e-01 | 100.0% | 100.0% |
| 3ci6B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 39.0 | 3.16e-01 | 91.2% | 87.3% |
| 2bbuA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 36.0 | 2.78e-01 | 73.5% | 37.8% |
| 2crhA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 35.0 | 3.16e-01 | 72.1% | 77.5% |
| 1yrvA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.50 | 37.0 | 2.93e-01 | 79.4% | 47.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4283629 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.67 | 49.0 | 3.95e-01 | 77.9% | 41.5% |
| 3444423 | 231.1.4.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Apc (acetophenone carboxylase) beta subunit middle domain › Hydantoinase_B | 0.64 | 41.0 | 3.24e-01 | 94.1% | 31.0% |
| 4029963 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.60 | 53.0 | 4.43e-01 | 97.1% | 81.7% |
| 4025894 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 48.0 | 4.03e-01 | 89.7% | 75.2% |
| 3979092 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.56 | 42.0 | 3.71e-01 | 86.8% | 69.6% |
| 3381691 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.56 | 49.0 | 3.12e-01 | 95.6% | 23.4% |
| 3860723 | 633.23.1.33 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin, GSG-1 | 0.55 | 43.0 | 2.98e-01 | 82.4% | 87.6% |
| 3682622 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 2.62e-01 | 92.6% | 16.5% |
| 3312483 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.53 | 38.0 | 3.23e-01 | 76.5% | 81.7% |
| 2041765 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.53 | 46.0 | 3.40e-01 | 97.1% | 57.5% |
| 4952199 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 42.0 | 3.13e-01 | 91.2% | 86.0% |
| 3801966 | 252.1.1.2 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › DUF7028 | 0.53 | 38.0 | 3.75e-01 | 86.8% | 70.7% |
| 2392345 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 42.0 | 4.24e-01 | 92.6% | 100.0% |
| 3880184 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 40.0 | 2.95e-01 | 91.2% | 77.5% |