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NC_070947.1__YP_010666943.1__PQB83_gp65__00065
Bact-VirNC_070947.1__YP_010666943.1__PQB83_gp65__00065
Identity
- Accession:
- NC_070947 ↗
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Taxonomy
TaxID: 2250412
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-89
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.87 | 52.0 | 5.15e-01 | 70.1% | 57.7% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.83 | 57.0 | 5.23e-01 | 80.6% | 55.2% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.83 | 54.0 | 6.09e-01 | 71.6% | 88.2% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 49.0 | 4.54e-01 | 70.1% | 48.2% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.83 | 59.0 | 5.05e-01 | 74.6% | 69.6% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.77 | 50.0 | 5.79e-01 | 73.1% | 90.0% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 59.0 | 5.35e-01 | 80.6% | 64.0% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.75 | 53.0 | 4.74e-01 | 85.1% | 53.3% |
| 3craB01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.74 | 56.0 | 5.21e-01 | 83.6% | 70.9% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.73 | 55.0 | 4.63e-01 | 80.6% | 74.3% |
| 3f1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.72 | 56.0 | 4.26e-01 | 82.1% | 46.3% |
| 1jogA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.70 | 65.0 | 5.04e-01 | 100.0% | 74.8% |
| 3vadA01 | 1.20.140.20 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain | 0.69 | 47.0 | 3.56e-01 | 70.1% | 87.2% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.69 | 51.0 | 4.56e-01 | 80.6% | 74.2% |
| 7tj9A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.68 | 52.0 | 4.51e-01 | 82.1% | 68.9% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.68 | 51.0 | 4.21e-01 | 82.1% | 87.5% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.67 | 50.0 | 4.34e-01 | 80.6% | 53.8% |
| 1ldjA02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.67 | 50.0 | 4.10e-01 | 80.6% | 84.6% |
| 3t5vA00 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 59.0 | 3.83e-01 | 100.0% | 55.9% |
| 2bduA02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.65 | 47.0 | 4.56e-01 | 77.6% | 68.9% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.65 | 49.0 | 4.39e-01 | 80.6% | 59.6% |
| 1umnG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 45.0 | 3.44e-01 | 73.1% | 32.1% |
| 3hgtA00 | 3.40.50.12360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 49.0 | 3.24e-01 | 82.1% | 66.8% |
| 1whuA00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.63 | 47.0 | 4.06e-01 | 79.1% | 52.9% |
| 2vx2G02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.62 | 42.0 | 4.55e-01 | 83.6% | 85.5% |
| 7lnpA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 47.0 | 2.99e-01 | 85.1% | 42.0% |
| 3gaeA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.59 | 52.0 | 3.52e-01 | 98.5% | 47.8% |
| 1ya0A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 49.0 | 3.56e-01 | 100.0% | 42.2% |
| 1n5uA05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.57 | 46.0 | 4.01e-01 | 100.0% | 55.4% |
| 6z3yB01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.57 | 46.0 | 2.92e-01 | 91.0% | 40.8% |
| 5xdcB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 48.0 | 4.14e-01 | 100.0% | 91.0% |
| 6fu1A00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.55 | 47.0 | 2.98e-01 | 100.0% | 51.9% |
| 3df7A01 | 3.40.50.11770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 39.0 | 3.46e-01 | 77.6% | 52.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3488979 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.93 | 60.0 | 4.67e-01 | 70.1% | 35.2% |
| 3531746 | 603.1.1.105 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 | 0.88 | 60.0 | 5.04e-01 | 70.1% | 71.4% |
| 3697208 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.87 | 58.0 | 4.57e-01 | 70.1% | 36.8% |
| 3864432 | 632.11.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N | 0.85 | 56.0 | 5.06e-01 | 76.1% | 51.1% |
| 1821875 | 4970.1.1.1 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.80 | 46.0 | 4.94e-01 | 70.1% | 66.1% |
| 3704748 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 57.0 | 5.53e-01 | 79.1% | 84.0% |
| 3178359 | 604.1.1.132 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KAR9 | 0.76 | 54.0 | 4.55e-01 | 74.6% | 78.2% |
| 5018636 | 605.1.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_2 | 0.76 | 52.0 | 5.13e-01 | 70.1% | 67.1% |
| 3847053 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.76 | 57.0 | 5.47e-01 | 79.1% | 85.3% |
| 3398473 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.75 | 51.0 | 4.30e-01 | 70.1% | 43.6% |
| 3373822 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.75 | 59.0 | 3.60e-01 | 85.1% | 37.4% |
| 3419469 | 3444.2.1.0 ↗ | alpha arrays › DP domain › XPC-binding domain and DDI helical domain › XPC-binding domain | 0.75 | 55.0 | 5.97e-01 | 80.6% | 94.5% |
| 4013157 | 605.1.1.230 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF28736 | 0.73 | 58.0 | 4.15e-01 | 83.6% | 56.7% |
| 3943776 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.73 | 55.0 | 4.49e-01 | 83.6% | 46.9% |
| 3231047 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.70 | 53.0 | 4.15e-01 | 80.6% | 50.0% |
| 5039558 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 54.0 | 4.36e-01 | 85.1% | 45.9% |
| 3403345 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 52.0 | 3.79e-01 | 80.6% | 31.4% |
| 3709867 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 54.0 | 3.37e-01 | 83.6% | 21.5% |
| 4226337 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.69 | 47.0 | 4.47e-01 | 79.1% | 60.0% |
| 3473853 | 3981.1.1.1 ↗ | alpha bundles › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › UPF0203 | 0.68 | 51.0 | 4.86e-01 | 82.1% | 77.5% |
| 3888273 | 627.1.1.2 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 | 0.67 | 50.0 | 4.46e-01 | 79.1% | 58.9% |
| 3704810 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.67 | 50.0 | 3.05e-01 | 79.1% | 21.4% |
| 1870497 | 3271.1.1.1 ↗ | alpha arrays › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › Ntox28 | 0.67 | 47.0 | 4.16e-01 | 74.6% | 73.3% |
| 3612971 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 50.0 | 3.73e-01 | 80.6% | 44.8% |
| 5044572 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.66 | 49.0 | 4.22e-01 | 79.1% | 76.2% |
| 3411768 | 627.1.1.2 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 | 0.65 | 49.0 | 4.38e-01 | 80.6% | 66.3% |
| 1711454 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.65 | 49.0 | 4.46e-01 | 80.6% | 62.2% |
| 3733350 | 2004.1.1.686 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, DEAD, Helicase_C | 0.64 | 53.0 | 3.08e-01 | 91.0% | 43.9% |
| 3568627 | 3755.3.1.312 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Leu_zip | 0.63 | 45.0 | 3.76e-01 | 74.6% | 78.3% |
| 3961960 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.61 | 44.0 | 4.00e-01 | 77.6% | 56.7% |
| 3396759 | 632.3.1.26 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Pex2_Pex12 | 0.60 | 48.0 | 3.47e-01 | 89.6% | 65.7% |
| 3827754 | 109.4.1.888 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_N | 0.55 | 50.0 | 4.15e-01 | 100.0% | 65.2% |
| 4027203 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 45.0 | 2.81e-01 | 100.0% | 22.1% |