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NC_070947.1__YP_010666945.1__PQB83_gp67__00067

Bact-Vir

NC_070947.1__YP_010666945.1__PQB83_gp67__00067

Identity

Accession:
NC_070947 ↗
Kingdom:
phage

Quality

74.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mudcatvirus› Arthrobacter_phage_KeaneyLin

TaxID: 2250412

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-88
PDB
Domain cluster: rep: NC_070877.1__YP_010660489.1__PP914_gp123__00123__D21-39_51-92
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cewA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 36.0 3.18e-01 86.5% 31.8%
4mv2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 35.0 3.01e-01 85.1% 29.2%
1bdp001 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 32.0 2.35e-01 100.0% 20.1%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.31e-01 95.9% 91.9%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 36.0 3.76e-01 87.8% 68.1%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 37.0 2.83e-01 70.3% 40.3%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.54 43.0 3.95e-01 87.8% 91.9%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 37.0 4.02e-01 93.2% 100.0%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.58e-01 93.2% 82.0%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.14e-01 71.6% 70.8%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 37.0 4.04e-01 93.2% 100.0%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 37.0 3.19e-01 77.0% 53.8%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.51 47.0 3.61e-01 100.0% 76.8%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 40.0 2.78e-01 93.2% 78.3%
4zfjD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 41.0 3.05e-01 95.9% 93.0%
5ywwA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 41.0 3.18e-01 94.6% 48.7%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043632 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 46.0 3.51e-01 82.4% 65.5%
5055280 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 45.0 3.65e-01 85.1% 73.8%
4009644 2008.1.1.160 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27151 0.56 46.0 3.58e-01 93.2% 65.3%
4976136 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.55 42.0 3.94e-01 83.8% 71.6%
3816107 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.55 35.0 3.88e-01 98.6% 87.3%
6647 241.8.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GK1464-like › GK1464-like › DUF5634 0.54 43.0 3.94e-01 87.8% 91.0%
4032324 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.54 45.0 3.18e-01 97.3% 76.5%
3674876 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.53 46.0 3.74e-01 95.9% 76.1%
4485376 6.1.1.49 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › PF29304 0.52 36.0 3.05e-01 73.0% 58.4%
3277683 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.51 47.0 3.58e-01 100.0% 71.5%
3593768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.26e-01 73.0% 81.1%
4497102 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.50 46.0 3.41e-01 100.0% 70.6%
3974066 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.50 46.0 3.60e-01 100.0% 81.3%