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NC_070947.1__YP_010666959.1__PQB83_gp81__00081

Bact-Vir

NC_070947.1__YP_010666959.1__PQB83_gp81__00081

Identity

Accession:
NC_070947 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mudcatvirus› Arthrobacter_phage_KeaneyLin

TaxID: 2250412

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-83
PDB
D2 high residues 93-154
PDB
Domain cluster: rep: SRR1747065_scaffold_38_prodigal-single.1__X__X__00176__D6-88
D3 high residues 158-215
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.81 72.0 5.82e-01 98.3% 59.4%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 34.0 4.07e-01 70.7% 97.1%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 49.0 3.89e-01 96.6% 60.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.33e-01 94.8% 82.8%
2sliA03 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.57 44.0 3.65e-01 82.8% 86.0%
3rlfF02 3.10.650.10 Alpha Beta › Roll › MalF N-terminal region-like › MalF N-terminal region-like 0.56 40.0 3.66e-01 77.6% 68.3%
5towB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 34.0 2.55e-01 87.9% 21.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.70e-01 74.1% 78.3%
6rjiA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 33.0 3.47e-01 86.2% 59.6%
1nuiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 38.0 4.19e-01 98.3% 100.0%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.11e-01 79.3% 72.9%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 4.08e-01 100.0% 92.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.00e-01 98.3% 75.8%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 4.07e-01 100.0% 97.9%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 36.0 3.36e-01 93.1% 58.4%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.74e-01 100.0% 18.4%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 33.0 2.67e-01 89.7% 29.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3173243 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.67 41.0 3.74e-01 89.7% 45.0%
3784201 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.63 40.0 3.36e-01 89.7% 37.0%
3731630 4.8.1.36 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7141 0.63 40.0 3.97e-01 91.4% 61.7%
4963287 375.1.1.334 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_0758 0.62 45.0 4.62e-01 77.6% 94.5%
3840052 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 38.0 4.28e-01 91.4% 92.5%
1736408 5.1.3.134 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_2 0.60 46.0 2.77e-01 87.9% 93.2%
4670926 2003.1.5.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_30 0.58 41.0 2.65e-01 75.9% 38.1%
3989485 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.58 41.0 4.30e-01 94.8% 86.0%
3241817 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.04e-01 77.6% 98.3%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.56 40.0 3.41e-01 77.6% 56.0%
3556601 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.55 40.0 3.91e-01 77.6% 96.9%
5003618 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.55 38.0 4.10e-01 96.6% 95.6%
3200493 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 40.0 4.13e-01 93.1% 83.6%
4014906 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 3.64e-01 91.4% 57.5%
4953223 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.54 38.0 4.02e-01 96.6% 88.0%
2321152 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.81e-01 100.0% 88.8%
3856611 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 38.0 3.74e-01 93.1% 71.4%
3506771 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.52 42.0 2.73e-01 94.8% 33.7%
3541613 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.52 36.0 3.53e-01 93.1% 64.7%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.51 41.0 4.10e-01 98.3% 88.3%
3687598 376.1.4.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 0.51 36.0 3.31e-01 74.1% 61.3%
5035177 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.51 39.0 4.05e-01 100.0% 92.6%
3926120 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.51 38.0 3.11e-01 93.1% 91.7%