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NC_070948.1__YP_010667045.1__PQB84_gp052__00072

Bact-Vir

NC_070948.1__YP_010667045.1__PQB84_gp052__00072

Identity

Accession:
NC_070948 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mollymurvirus› Gordonia_phage_Mollymur

TaxID: 2590895

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-147
PDB
Domain cluster: rep: NC_048047.1__YP_009810060.1__HOU02_gp295__00406__D36-128
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.79 54.0 5.77e-01 70.3% 92.0%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 50.0 5.86e-01 71.3% 90.3%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 50.0 6.10e-01 70.3% 98.5%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 53.0 5.94e-01 70.3% 100.0%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.77 66.0 6.82e-01 91.1% 98.9%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.76 48.0 5.45e-01 70.3% 84.2%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 51.0 5.88e-01 70.3% 93.3%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 66.0 5.27e-01 94.1% 90.0%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 63.0 5.72e-01 90.1% 84.6%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.72 58.0 5.44e-01 84.2% 71.7%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.72 50.0 5.31e-01 71.3% 88.5%
5mmjo00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.71 47.0 5.31e-01 91.1% 89.3%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.71 64.0 5.94e-01 98.0% 88.0%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 43.0 5.33e-01 81.2% 100.0%
3cwzB01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.71 63.0 5.48e-01 94.1% 88.4%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.70 62.0 5.19e-01 100.0% 73.9%
2xl4A00 1.20.120.1420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain 0.69 63.0 5.51e-01 99.0% 98.0%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.69 48.0 5.30e-01 87.1% 92.4%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.68 47.0 5.07e-01 70.3% 91.5%
1io1A01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.68 60.0 5.11e-01 100.0% 75.1%
4nx9A01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.67 61.0 5.29e-01 100.0% 81.3%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 54.0 4.85e-01 88.1% 93.1%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 53.0 5.71e-01 87.1% 98.8%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 4.51e-01 76.2% 73.4%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 53.0 5.43e-01 86.1% 95.9%
4p3gD00 1.10.3450.40 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain 0.66 59.0 4.69e-01 97.0% 63.6%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.66 53.0 4.60e-01 89.1% 74.4%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.66 55.0 5.10e-01 98.0% 72.7%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.65 57.0 4.75e-01 100.0% 67.9%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 53.0 5.41e-01 89.1% 93.9%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.65 60.0 5.64e-01 100.0% 88.2%
6g94A00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.64 58.0 4.86e-01 100.0% 88.4%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 60.0 5.54e-01 100.0% 95.9%
1s3qG00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 54.0 4.68e-01 95.0% 98.8%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 58.0 5.53e-01 100.0% 93.9%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 57.0 5.50e-01 100.0% 100.0%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 49.0 4.98e-01 85.1% 87.1%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 57.0 5.44e-01 100.0% 93.9%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 57.0 5.46e-01 100.0% 94.7%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.62 56.0 5.13e-01 100.0% 88.5%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.61 54.0 5.14e-01 100.0% 87.5%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 55.0 5.36e-01 100.0% 93.8%
1orsC00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.60 52.0 4.76e-01 95.0% 93.2%
4l8eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 53.0 5.16e-01 100.0% 94.5%
1r5aA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 51.0 4.61e-01 96.0% 91.2%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.58 49.0 3.98e-01 92.1% 77.5%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 49.0 3.44e-01 95.0% 36.4%
2ykgA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.56 42.0 3.84e-01 91.1% 60.2%
3dkaB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.56 43.0 3.95e-01 94.1% 62.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3229095 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.81 57.0 5.73e-01 71.3% 85.0%
3631582 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.78 62.0 6.27e-01 83.2% 90.0%
4133341 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.78 72.0 6.79e-01 99.0% 93.3%
3342823 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 53.0 5.08e-01 71.3% 67.0%
4181721 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.76 70.0 6.42e-01 97.0% 95.2%
3623906 603.1.1.103 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.76 64.0 5.80e-01 90.1% 71.1%
3327018 603.1.1.98 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.76 63.0 4.79e-01 89.1% 68.3%
3264574 603.1.1.98 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.76 64.0 5.27e-01 90.1% 56.0%
4541985 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.76 69.0 5.72e-01 100.0% 75.4%
3557114 604.1.1.66 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL 0.75 63.0 6.17e-01 90.1% 90.0%
3988781 604.6.1.63 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › DUF3169 0.75 64.0 5.74e-01 91.1% 82.2%
3396744 603.1.1.6 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.74 63.0 4.97e-01 90.1% 51.3%
162404 603.1.1.6 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.74 63.0 5.72e-01 90.1% 84.6%
3679194 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.74 58.0 5.37e-01 86.1% 66.4%
3498232 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.74 66.0 5.22e-01 94.1% 86.3%
3735775 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 57.0 4.28e-01 81.2% 37.9%
3214392 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.73 59.0 5.00e-01 87.1% 72.1%
3444721 603.1.1.6 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.73 61.0 4.90e-01 91.1% 79.0%
3516461 603.1.1.103 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.73 58.0 5.69e-01 85.1% 88.2%
3439564 603.1.1.1 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.72 66.0 5.29e-01 98.0% 89.2%
3897507 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.72 48.0 4.86e-01 70.3% 69.0%
3394684 603.1.1.103 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.72 59.0 5.38e-01 89.1% 71.9%
3225005 192.29.1.31 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › CRIC_ras_sig 0.71 66.0 5.99e-01 100.0% 83.1%
3328606 3684.1.1.2 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.71 63.0 5.15e-01 100.0% 73.7%
5079776 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 63.0 5.14e-01 100.0% 61.6%
3710472 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.70 58.0 4.38e-01 91.1% 44.4%
4187493 603.1.1.103 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.70 65.0 5.67e-01 100.0% 89.7%
3697999 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 62.0 4.54e-01 96.0% 60.4%
3667225 603.2.1.25 ↗ alpha bundles › STAT-like › STAT › STAT › DUF4220 0.69 64.0 4.41e-01 100.0% 81.6%
4880236 603.2.1.1 ↗ alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.69 58.0 5.88e-01 90.1% 96.0%
3963952 3684.1.1.26 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › SirB 0.69 64.0 5.95e-01 100.0% 90.3%
3565766 603.1.1.103 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.68 61.0 5.17e-01 96.0% 88.7%
4089352 5069.1.1.63 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › SirB 0.68 62.0 5.79e-01 100.0% 87.2%
5006655 5069.1.1.2 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB 0.67 60.0 4.68e-01 98.0% 86.0%
3331107 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.67 48.0 3.63e-01 73.3% 62.6%
3184140 5086.1.1.87 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.67 46.0 4.43e-01 70.3% 63.5%
3461787 109.5.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › adenylylcyclase associated protein, CAP-N › adenylylcyclase associated protein, CAP-N › DUF4220 0.67 60.0 4.55e-01 99.0% 92.5%
3649968 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.67 46.0 3.75e-01 70.3% 46.5%
3967556 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.67 60.0 6.03e-01 95.0% 100.0%
3409850 192.29.1.24 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM237 0.66 59.0 4.95e-01 100.0% 83.4%
3171689 603.1.1.105 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.66 54.0 5.15e-01 90.1% 90.8%
5024001 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.66 50.0 5.03e-01 85.1% 81.0%
3585004 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.65 53.0 4.87e-01 87.1% 72.3%
4878251 601.7.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NTase_sub_bind 0.64 55.0 5.08e-01 95.0% 94.7%
4082878 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 56.0 3.13e-01 100.0% 10.5%
3532664 3755.3.1.391 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › USHBP1_PDZ-bd 0.62 52.0 4.68e-01 100.0% 65.7%
3179945 616.1.1.23 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › PF28719 0.62 44.0 4.42e-01 76.2% 73.0%
4848262 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.61 52.0 5.16e-01 94.1% 100.0%
3210941 109.4.1.371 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RTP1_C1 0.61 54.0 3.63e-01 100.0% 31.4%
3743077 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 55.0 5.08e-01 98.0% 80.8%
4134003 3939.1.1.141 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › USHBP1_PDZ-bd 0.56 49.0 4.33e-01 100.0% 64.7%
3656227 633.7.1.0 ↗ alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like 0.56 43.0 4.06e-01 89.1% 66.2%
3233374 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.53 45.0 3.01e-01 95.0% 65.7%