←Back to structures

NC_070949.1__YP_010667147.1__PQB85_gp61__00061

Bact-Vir

NC_070949.1__YP_010667147.1__PQB85_gp61__00061

Identity

Accession:
NC_070949 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Midgardsormrvirus› Erwinia_phage_Midgardsormr38

TaxID: 2663326

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-80
PDB
Domain cluster: rep: NC_028956.1__YP_009213817.1__AVV62_gp70__00059__D8-85
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05269.18 best Phage_CII 76.5 2.10e-21 100.0% 87.9%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xwrC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.82 73.0 7.54e-01 96.2% 100.0%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 43.0 4.73e-01 75.0% 89.2%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.61 42.0 3.29e-01 72.5% 34.5%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 44.0 4.37e-01 77.5% 87.8%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 39.0 3.81e-01 75.0% 60.9%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 42.0 4.32e-01 80.0% 89.5%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 30.0 3.45e-01 73.8% 71.4%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 40.0 3.87e-01 75.0% 87.6%
1evyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 42.0 3.56e-01 85.0% 76.0%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.90e-01 83.7% 82.9%
2imfA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 43.0 3.27e-01 86.3% 72.9%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 38.0 3.89e-01 73.8% 92.2%
5i1uA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 43.0 2.93e-01 90.0% 39.7%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 42.0 4.30e-01 90.0% 98.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2786 101.1.4.6 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII 0.92 63.0 6.40e-01 70.0% 71.8%
3976541 101.1.4.6 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII 0.91 64.0 6.86e-01 75.0% 82.9%
2843606 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.63 39.0 3.89e-01 87.5% 59.0%
3701892 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.61 48.0 3.81e-01 86.3% 75.8%
5031730 604.39.1.3 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS 0.58 43.0 3.35e-01 78.8% 37.9%
3392449 2485.1.1.67 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT 0.55 43.0 3.40e-01 86.3% 63.3%
4140444 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.53 40.0 3.67e-01 82.5% 79.1%
4029679 2004.1.1.71 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT 0.52 40.0 2.86e-01 86.3% 43.3%
3588944 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 31.0 3.33e-01 71.2% 68.6%
4680288 101.1.1.96 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Neugrin 0.50 39.0 3.83e-01 85.0% 76.7%