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NC_070950.1__YP_010667335.1__PQB86_gp156__00156

Bact-Vir

NC_070950.1__YP_010667335.1__PQB86_gp156__00156

Identity

Accession:
NC_070950 ↗
Kingdom:
phage

Quality

66.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Miamivirus› Klebsiella_phage_Miami

TaxID: 2767581

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-85
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.84 71.0 5.26e-01 92.9% 38.8%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 47.0 5.17e-01 91.8% 73.5%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 58.0 6.07e-01 90.6% 87.3%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.74 51.0 4.28e-01 71.8% 83.9%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 44.0 5.06e-01 97.6% 83.9%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.72 59.0 5.27e-01 88.2% 87.2%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 50.0 4.87e-01 90.6% 65.6%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 43.0 4.72e-01 96.5% 74.6%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.69 58.0 5.74e-01 95.3% 86.4%
2p7vA00 1.20.120.1370 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 0.65 56.0 4.66e-01 95.3% 89.4%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.65 50.0 4.97e-01 87.1% 77.8%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 47.0 4.71e-01 91.8% 77.6%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 51.0 4.79e-01 85.9% 99.0%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 56.0 5.37e-01 97.6% 85.0%
1nfvA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 51.0 4.01e-01 98.8% 42.6%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.62 50.0 4.68e-01 87.1% 69.8%
2gl2B00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 55.0 5.09e-01 98.8% 76.1%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.58 46.0 4.55e-01 85.9% 80.2%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.56 40.0 4.23e-01 78.8% 86.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970666 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.77 60.0 6.32e-01 92.9% 92.0%
3281127 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.77 66.0 6.53e-01 97.6% 87.8%
3909017 192.5.1.1 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.76 53.0 5.27e-01 97.6% 68.9%
3955629 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.71 63.0 5.95e-01 97.6% 81.0%
5081366 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.71 63.0 5.00e-01 96.5% 61.8%
3854699 3860.1.1.285 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Casc1_N 0.69 54.0 5.02e-01 89.4% 66.7%
3265161 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 58.0 5.73e-01 98.8% 90.0%
3659069 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.66 58.0 5.18e-01 97.6% 69.2%
5042543 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.64 49.0 4.41e-01 83.5% 58.3%
4944471 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.64 52.0 4.16e-01 88.2% 94.1%
5013067 604.39.1.3 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS 0.64 51.0 4.02e-01 88.2% 85.4%
3840064 192.24.1.0 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.60 52.0 5.03e-01 95.3% 84.2%
4193577 198.1.1.12 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF445 0.59 42.0 4.12e-01 75.3% 82.1%
3245789 192.2.1.69 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PF29569 0.59 40.0 4.17e-01 78.8% 75.0%
4426428 198.1.1.12 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF445 0.58 41.0 3.90e-01 75.3% 65.7%
1866769 219.1.1.68 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › RickCE_cat 0.58 51.0 3.65e-01 98.8% 57.3%