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NC_070951.1__YP_010667590.1__PQC01_gp111__00111
Bact-VirNC_070951.1__YP_010667590.1__PQC01_gp111__00111
Identity
- Accession:
- NC_070951 ↗
- Kingdom:
- phage
Quality
97.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Menderavirus›
Stenotrophomonas_maltophilia_phage_vB_SmaM_Ps15
TaxID: 3071007
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-107
Domain cluster:
rep: MT345684.1__QJI53333.1__vBAcoSR7M_11__00011__D8-100
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03013.20 best | Pyr_excise | 38.2 | 2.10e-09 | 67.0% | 82.7% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1eniA00 | 1.10.440.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease V › T4 endonuclease V | 0.76 | 70.0 | 6.23e-01 | 99.0% | 94.2% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 45.0 | 4.23e-01 | 76.0% | 94.2% |
| 4dllB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 45.0 | 4.13e-01 | 76.0% | 86.9% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.61 | 44.0 | 4.08e-01 | 76.0% | 89.1% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.60 | 43.0 | 4.10e-01 | 76.0% | 93.4% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 42.0 | 3.90e-01 | 75.0% | 86.3% |
| 2yx8A00 | 1.10.150.510 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family | 0.57 | 31.0 | 3.40e-01 | 98.0% | 63.0% |
| 3uo2B02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.55 | 37.0 | 4.00e-01 | 99.0% | 81.0% |
| 1j77A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.54 | 47.0 | 3.85e-01 | 100.0% | 86.4% |
| 1b48A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 36.0 | 3.56e-01 | 70.0% | 75.2% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.52 | 36.0 | 3.78e-01 | 71.0% | 83.0% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 46.0 | 4.16e-01 | 97.0% | 79.3% |
| 1nm2A02 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.51 | 39.0 | 3.07e-01 | 84.0% | 76.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930388 | 615.1.1.0 ↗ | alpha arrays › T4 endonuclease V › T4 endonuclease V › T4 endonuclease V | 0.84 | 76.0 | 7.21e-01 | 96.0% | 97.4% |
| 4982342 | 615.1.1.1 ↗ | alpha arrays › T4 endonuclease V › T4 endonuclease V › T4 endonuclease V › Pyr_excise | 0.81 | 70.0 | 6.95e-01 | 92.0% | 93.3% |
| 3659685 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.59 | 34.0 | 2.71e-01 | 70.0% | 27.8% |
| 3376754 | 109.4.1.1336 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3 | 0.57 | 34.0 | 3.41e-01 | 70.0% | 57.1% |
| 3175114 | 109.4.1.25 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DIL | 0.57 | 47.0 | 3.08e-01 | 91.0% | 90.0% |
| 4990337 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 34.0 | 3.56e-01 | 90.0% | 65.6% |
| 1411830 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 37.0 | 2.91e-01 | 71.0% | 45.7% |
| 3871766 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.52 | 32.0 | 3.76e-01 | 90.0% | 92.3% |
| 3655099 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.52 | 32.0 | 2.67e-01 | 70.0% | 34.9% |
| 3971969 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.52 | 46.0 | 4.17e-01 | 97.0% | 81.5% |
| 55698 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.51 | 46.0 | 3.85e-01 | 99.0% | 65.7% |
| 3939 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.51 | 46.0 | 3.84e-01 | 99.0% | 65.7% |