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NC_070951.1__YP_010667704.1__PQC01_gp253__00225

Bact-Vir

NC_070951.1__YP_010667704.1__PQC01_gp253__00225

Identity

Accession:
NC_070951 ↗
Kingdom:
phage

Quality

74.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Menderavirus› Stenotrophomonas_maltophilia_phage_vB_SmaM_Ps15

TaxID: 3071007

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-128
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 33.0 4.36e-01 90.0% 83.3%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 31.0 4.30e-01 90.8% 91.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.66 34.0 4.47e-01 75.8% 93.7%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 32.0 4.26e-01 90.0% 93.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 29.0 3.96e-01 70.8% 83.9%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 29.0 3.83e-01 81.7% 85.7%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 41.0 4.44e-01 93.3% 82.4%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 24.0 3.70e-01 72.5% 91.8%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 4.05e-01 90.8% 62.7%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 4.46e-01 98.3% 87.4%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.79e-01 95.0% 63.2%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 28.0 3.55e-01 85.8% 85.1%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 27.0 3.34e-01 85.8% 81.4%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 27.0 3.42e-01 86.7% 89.4%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 4.02e-01 92.5% 85.6%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 34.0 4.67e-01 91.7% 100.0%
3941152 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 35.0 4.59e-01 100.0% 100.0%
3939881 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 35.0 4.23e-01 94.2% 89.3%
3598206 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 4.49e-01 92.5% 79.1%
3481770 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.60 31.0 3.65e-01 70.0% 71.2%
3936730 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 4.41e-01 91.7% 80.9%
3964241 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.58 31.0 3.78e-01 81.7% 84.3%
3300506 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.58 34.0 3.28e-01 95.0% 50.7%
3257304 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.57 41.0 4.38e-01 92.5% 86.7%
3494766 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 4.40e-01 91.7% 91.6%
3414887 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.56 43.0 3.27e-01 92.5% 34.9%
4025365 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.56 39.0 4.03e-01 89.2% 77.3%
3522591 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.56 44.0 3.28e-01 92.5% 33.7%
3497957 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.55 44.0 3.99e-01 92.5% 62.4%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 31.0 3.78e-01 89.2% 92.9%
3877687 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 44.0 4.30e-01 92.5% 80.8%
3842576 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.54 41.0 4.13e-01 98.3% 80.8%
3255344 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.53 43.0 4.31e-01 91.7% 85.8%
3491283 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.53 45.0 4.08e-01 92.5% 70.9%
3323474 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.53 31.0 3.52e-01 88.3% 76.7%
3563547 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.53 43.0 4.25e-01 91.7% 84.0%
3701345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 30.0 3.52e-01 81.7% 82.5%
3496355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 26.0 3.47e-01 83.3% 100.0%
3235201 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 4.09e-01 92.5% 82.4%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 34.0 3.75e-01 96.7% 87.2%
3246255 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 30.0 3.64e-01 78.3% 98.6%
3250428 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 30.0 2.86e-01 88.3% 48.3%
D2 medium residues 138-176
PDB
Domain cluster: representative