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NC_070951.1__YP_010667735.1__PQC01_gp222__00256

Bact-Vir

NC_070951.1__YP_010667735.1__PQC01_gp222__00256

Identity

Accession:
NC_070951 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Menderavirus› Stenotrophomonas_maltophilia_phage_vB_SmaM_Ps15

TaxID: 3071007

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-116
PDB
Domain cluster: rep: NC_048654.1__YP_009832427.1__HWB09_gp094__00098__D11-80
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 36.0 4.02e-01 100.0% 61.5%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.58 46.0 3.66e-01 88.2% 59.1%
7ahfA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 44.0 3.69e-01 81.2% 74.0%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 4.32e-01 95.3% 77.3%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.56 50.0 3.56e-01 98.8% 75.4%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.57e-01 83.5% 78.4%
1jgtB01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 45.0 3.48e-01 95.3% 91.7%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.54 43.0 4.03e-01 91.8% 93.8%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 33.0 3.87e-01 83.5% 96.5%
1mjtA02 3.90.440.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase;Heme Domain; Chain A, domain 2 › Nitric Oxide Synthase;Heme Domain;Chain A domain 2 0.51 37.0 3.58e-01 95.3% 68.4%
5gaeH01 3.10.430.100 Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain 0.50 34.0 3.59e-01 71.8% 94.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031670 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.70 29.0 3.47e-01 98.8% 51.7%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.65 32.0 3.47e-01 100.0% 54.3%
3395122 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.59 33.0 4.01e-01 96.5% 92.0%
3332613 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.58 41.0 3.67e-01 85.9% 52.5%
4580919 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.57 41.0 4.25e-01 95.3% 81.2%
3969910 3772.1.1.1 ↗ beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.56 43.0 3.79e-01 83.5% 83.8%
4937014 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 43.0 2.85e-01 84.7% 48.2%
3448558 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.55 43.0 2.71e-01 88.2% 40.5%
4345017 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.55 42.0 2.56e-01 83.5% 67.2%
4429847 3675.1.1.1 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.55 46.0 3.77e-01 100.0% 49.1%
4026237 59.1.1.8 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIF_beta_N 0.54 41.0 4.02e-01 80.0% 94.4%
1108143 3772.1.1.1 ↗ beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.54 42.0 3.61e-01 82.4% 81.8%
3968774 3772.1.1.1 ↗ beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.54 42.0 3.66e-01 83.5% 83.1%
3613921 330.1.1.22 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.53 41.0 3.68e-01 84.7% 97.6%
4123449 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.53 29.0 2.96e-01 97.6% 51.8%
5007358 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 44.0 3.93e-01 97.6% 100.0%
3280737 4004.1.1.0 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.52 33.0 3.00e-01 96.5% 44.4%
3568631 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 43.0 3.07e-01 100.0% 89.7%