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NC_070955.1__YP_010668171.1__PQC05_gp05__00005

Bact-Vir

NC_070955.1__YP_010668171.1__PQC05_gp05__00005

Identity

Accession:
NC_070955 ↗
Kingdom:
phage

Quality

77.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bigmanorsvirus› Burkholderia_phage_BgManors32

TaxID: 2894335

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-58
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.81 69.0 6.50e-01 95.8% 88.1%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 70.0 6.83e-01 100.0% 94.2%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 68.0 5.69e-01 100.0% 70.2%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 58.0 5.37e-01 83.3% 95.2%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.75 67.0 5.33e-01 100.0% 63.2%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 62.0 6.19e-01 100.0% 90.0%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.75 62.0 5.49e-01 100.0% 63.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 5.23e-01 100.0% 54.2%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 64.0 6.41e-01 100.0% 94.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 67.0 6.30e-01 100.0% 91.2%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 4.77e-01 100.0% 62.3%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 64.0 5.91e-01 100.0% 77.8%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 62.0 5.78e-01 95.8% 95.1%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 64.0 6.36e-01 97.9% 98.0%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.72 60.0 5.80e-01 100.0% 85.2%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 5.29e-01 100.0% 63.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 5.48e-01 100.0% 65.8%
2xkoC01 2.30.30.660 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3539) 0.71 56.0 5.69e-01 89.6% 93.8%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 4.57e-01 100.0% 44.1%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.55e-01 100.0% 73.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.93e-01 100.0% 87.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 59.0 5.78e-01 100.0% 88.5%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 4.97e-01 100.0% 54.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 57.0 5.78e-01 100.0% 93.8%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.69 60.0 4.10e-01 100.0% 31.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 56.0 5.64e-01 89.6% 100.0%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.69 48.0 3.41e-01 79.2% 24.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 5.45e-01 100.0% 75.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 5.35e-01 100.0% 83.9%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 55.0 4.20e-01 100.0% 42.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 56.0 5.25e-01 95.8% 94.9%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.50e-01 93.8% 95.8%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 55.0 5.35e-01 95.8% 87.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 53.0 3.32e-01 93.8% 25.3%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.16e-01 100.0% 90.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 54.0 4.54e-01 100.0% 64.8%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.64 55.0 4.08e-01 100.0% 40.3%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 53.0 4.07e-01 100.0% 44.8%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 50.0 4.09e-01 100.0% 46.2%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.63 52.0 4.20e-01 100.0% 96.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 52.0 5.32e-01 93.8% 97.8%
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 3.86e-01 79.2% 94.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.76e-01 100.0% 75.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 49.0 4.54e-01 93.8% 77.3%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 51.0 4.50e-01 100.0% 88.7%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.80e-01 100.0% 75.8%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 48.0 3.97e-01 100.0% 48.9%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 48.0 2.98e-01 97.9% 91.0%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.58 49.0 4.22e-01 100.0% 70.7%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.57 44.0 2.64e-01 89.6% 32.2%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 46.0 3.69e-01 100.0% 79.8%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.57 47.0 2.82e-01 100.0% 34.8%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 45.0 3.51e-01 100.0% 64.6%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 77.0 7.34e-01 100.0% 87.3%
3275615 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.82 72.0 5.21e-01 97.9% 43.4%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 70.0 6.75e-01 100.0% 87.3%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 69.0 6.49e-01 100.0% 80.0%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.80 70.0 6.21e-01 100.0% 68.6%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.80 71.0 6.38e-01 100.0% 75.4%
3576128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 70.0 5.26e-01 100.0% 47.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 67.0 6.49e-01 100.0% 85.5%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.55e-01 100.0% 89.1%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.78 69.0 6.08e-01 100.0% 68.6%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 67.0 6.49e-01 100.0% 92.7%
3617111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 68.0 5.55e-01 100.0% 53.3%
3665882 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.78 69.0 4.96e-01 100.0% 38.5%
5066141 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.77 66.0 6.05e-01 100.0% 72.3%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 5.92e-01 100.0% 70.0%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 69.0 6.36e-01 100.0% 91.7%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 64.0 6.17e-01 100.0% 85.5%
3238405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 67.0 6.44e-01 100.0% 89.1%
4184660 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 66.0 4.81e-01 100.0% 48.5%
4325815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 64.0 3.58e-01 100.0% 7.5%
3688068 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.75 65.0 4.60e-01 100.0% 50.0%
4963650 4.1.1.488 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7346 0.75 59.0 5.69e-01 95.8% 76.4%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 66.0 6.37e-01 100.0% 89.1%
4998148 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 62.0 6.00e-01 100.0% 83.6%
3389169 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 65.0 5.42e-01 100.0% 56.5%
3964846 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.74 61.0 5.10e-01 100.0% 52.9%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.74 64.0 6.00e-01 100.0% 78.3%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 5.80e-01 100.0% 83.6%
3963450 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.73 62.0 4.59e-01 100.0% 37.0%
3407089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 65.0 5.47e-01 100.0% 60.0%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.26e-01 100.0% 55.6%
3922426 4.1.1.363 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.73 63.0 4.77e-01 100.0% 45.8%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.73 62.0 6.00e-01 100.0% 85.5%
3989139 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.73 58.0 5.30e-01 100.0% 66.2%
3786430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.32e-01 100.0% 98.0%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.72e-01 100.0% 77.1%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.72 63.0 5.60e-01 100.0% 70.0%
3839849 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.72 59.0 5.34e-01 100.0% 67.7%
3503291 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.72 63.0 4.84e-01 100.0% 44.5%
3784334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 62.0 5.86e-01 100.0% 81.7%
4193599 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 4.80e-01 100.0% 61.9%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.87e-01 100.0% 81.7%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.55e-01 100.0% 77.1%
4493478 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.71 62.0 4.54e-01 100.0% 39.2%
4347999 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.71 58.0 5.27e-01 100.0% 67.7%
4032729 4.1.1.168 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2187 0.71 62.0 5.90e-01 100.0% 89.7%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.71 57.0 5.23e-01 100.0% 67.7%
4611708 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.71 57.0 5.37e-01 100.0% 73.3%
3709029 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.78e-01 100.0% 83.3%
1408049 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.71 62.0 4.48e-01 100.0% 36.0%
3963760 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.70 59.0 4.31e-01 100.0% 37.1%
4183857 325.1.7.30 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Peptidase_M23 0.70 54.0 4.70e-01 85.4% 56.0%
2444014 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.70 59.0 4.32e-01 100.0% 34.5%
4116921 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.70 56.0 5.27e-01 100.0% 73.3%
3980359 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.70 58.0 4.29e-01 100.0% 35.0%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.70 56.0 5.14e-01 100.0% 67.7%
1146672 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.70 61.0 4.62e-01 97.9% 43.2%
3956735 6055.1.1.1 ↗ extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › YajC 0.70 55.0 5.67e-01 97.9% 95.6%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.49e-01 100.0% 74.6%
4046385 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.70 59.0 4.31e-01 100.0% 37.1%
3987478 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.69 59.0 4.40e-01 100.0% 37.7%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 4.80e-01 100.0% 76.7%
3968842 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 57.0 4.33e-01 100.0% 38.5%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.73e-01 100.0% 89.1%
4562486 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.69 57.0 4.12e-01 100.0% 34.8%
3972956 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 58.0 4.24e-01 100.0% 33.8%
3947337 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.69 58.0 4.13e-01 100.0% 31.6%
145285 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.68 58.0 5.29e-01 100.0% 75.8%
3850131 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 56.0 4.75e-01 100.0% 70.6%
146634 4.1.1.119 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5606 0.66 52.0 5.19e-01 100.0% 91.8%
4874733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.12e-01 97.9% 90.7%
4184958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 50.0 4.19e-01 100.0% 51.8%
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.22e-01 100.0% 80.0%