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NC_070958.1__YP_010668777.1__PQC08_gp246__00029
Bact-VirNC_070958.1__YP_010668777.1__PQC08_gp246__00029
Identity
- Accession:
- NC_070958 ↗
- Kingdom:
- phage
Quality
79.4
mean pLDDT
Taxonomy
TaxID: 2593322
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 59-114
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 50.0 | 4.83e-01 | 75.0% | 66.7% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.70 | 50.0 | 4.21e-01 | 75.0% | 55.4% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.70 | 48.0 | 4.12e-01 | 75.0% | 45.6% |
| 2w20B01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.68 | 58.0 | 3.47e-01 | 94.6% | 23.7% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.67 | 46.0 | 4.08e-01 | 73.2% | 58.3% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 46.0 | 4.10e-01 | 75.0% | 61.9% |
| 1y7bA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.64 | 54.0 | 3.37e-01 | 96.4% | 28.9% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.63 | 49.0 | 4.63e-01 | 89.3% | 78.9% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.63 | 52.0 | 3.76e-01 | 98.2% | 72.5% |
| 2rkcA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.63 | 49.0 | 2.97e-01 | 87.5% | 23.1% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 44.0 | 3.71e-01 | 73.2% | 52.6% |
| 2ec1A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 51.0 | 4.10e-01 | 94.6% | 75.4% |
| 6muwK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.62 | 42.0 | 2.92e-01 | 71.4% | 99.0% |
| 2wsuA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 43.0 | 3.25e-01 | 73.2% | 66.9% |
| 2h36X00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 42.0 | 3.43e-01 | 73.2% | 45.4% |
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.61 | 49.0 | 3.62e-01 | 92.9% | 66.0% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.60 | 50.0 | 3.55e-01 | 98.2% | 67.2% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.60 | 49.0 | 4.13e-01 | 96.4% | 90.2% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 43.0 | 2.87e-01 | 80.4% | 35.7% |
| 1dwnA00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.58 | 49.0 | 3.87e-01 | 100.0% | 90.6% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 36.0 | 3.50e-01 | 94.6% | 52.9% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 47.0 | 3.82e-01 | 91.1% | 69.2% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.57 | 49.0 | 3.88e-01 | 98.2% | 98.3% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 43.0 | 4.08e-01 | 85.7% | 69.7% |
| 2daxA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 46.0 | 3.50e-01 | 94.6% | 54.6% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 41.0 | 3.94e-01 | 85.7% | 66.7% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 45.0 | 3.85e-01 | 91.1% | 60.4% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 47.0 | 3.18e-01 | 100.0% | 38.3% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 40.0 | 3.83e-01 | 80.4% | 68.7% |
| 6baoA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 42.0 | 3.14e-01 | 85.7% | 56.6% |
| 1f9qD00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 41.0 | 3.90e-01 | 82.1% | 69.7% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.54 | 37.0 | 3.94e-01 | 71.4% | 95.8% |
| 3b59A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 36.0 | 2.92e-01 | 73.2% | 37.2% |
| 4egwA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.52 | 42.0 | 3.43e-01 | 100.0% | 90.1% |
| 1ub1A00 | 3.30.890.10 | Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A | 0.52 | 40.0 | 3.35e-01 | 96.4% | 43.2% |
| 2yz0A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.52 | 42.0 | 3.37e-01 | 100.0% | 60.1% |
| 6p58A00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 37.0 | 2.88e-01 | 80.4% | 56.7% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.52 | 43.0 | 3.48e-01 | 100.0% | 89.3% |
| 2lf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 39.0 | 2.85e-01 | 87.5% | 84.6% |
| 4ebgA00 | 3.10.450.560 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 3.48e-01 | 96.4% | 53.6% |
| 3k7uC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 43.0 | 3.65e-01 | 98.2% | 66.3% |
| 2k18A02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 42.0 | 3.41e-01 | 100.0% | 91.9% |
| 1eigA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 36.0 | 3.46e-01 | 82.1% | 90.4% |
| 2mc2A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 39.0 | 2.74e-01 | 89.3% | 85.9% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 36.0 | 2.99e-01 | 85.7% | 85.4% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3955467 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.75 | 55.0 | 5.06e-01 | 76.8% | 64.3% |
| 3561257 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.67 | 53.0 | 5.11e-01 | 98.2% | 75.4% |
| 3939443 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.67 | 57.0 | 4.65e-01 | 100.0% | 57.3% |
| 3828973 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.67 | 51.0 | 4.89e-01 | 96.4% | 72.3% |
| 3291529 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.66 | 55.0 | 4.49e-01 | 94.6% | 56.5% |
| 3496242 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 43.0 | 4.46e-01 | 71.4% | 100.0% |
| 3321190 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.63 | 52.0 | 3.25e-01 | 92.9% | 28.8% |
| 3445272 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.63 | 53.0 | 3.26e-01 | 96.4% | 34.4% |
| 3738504 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.63 | 42.0 | 3.46e-01 | 71.4% | 43.6% |
| 3819740 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.62 | 52.0 | 4.52e-01 | 96.4% | 77.8% |
| 3294867 | 3459.1.1.3 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 | 0.62 | 52.0 | 4.42e-01 | 96.4% | 92.6% |
| 5047049 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.62 | 52.0 | 3.00e-01 | 100.0% | 77.0% |
| 3805804 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.61 | 50.0 | 4.49e-01 | 96.4% | 82.4% |
| 3295575 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.61 | 50.0 | 4.24e-01 | 96.4% | 70.0% |
| 4937915 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.61 | 51.0 | 4.24e-01 | 94.6% | 56.6% |
| 3733696 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.60 | 50.0 | 3.02e-01 | 92.9% | 23.9% |
| 3890539 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 46.0 | 4.55e-01 | 82.1% | 85.0% |
| 3236317 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 50.0 | 4.20e-01 | 100.0% | 91.4% |
| 3868838 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.60 | 47.0 | 3.38e-01 | 85.7% | 45.6% |
| 5051418 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 50.0 | 3.89e-01 | 100.0% | 64.4% |
| 3897238 | 12.3.1.42 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 | 0.58 | 46.0 | 3.09e-01 | 94.6% | 30.6% |
| 5001360 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 47.0 | 2.87e-01 | 98.2% | 13.5% |
| 3930641 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.58 | 49.0 | 4.00e-01 | 94.6% | 87.6% |
| 3968468 | 4152.2.1.0 ↗ | a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 | 0.58 | 47.0 | 4.35e-01 | 94.6% | 100.0% |
| 4964696 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.58 | 45.0 | 3.65e-01 | 87.5% | 50.4% |
| 3611540 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 48.0 | 2.86e-01 | 94.6% | 22.3% |
| 5031271 | 850.1.1.2 ↗ | a+b three layers › Hypothetical protein Ta1206-like › Hypothetical protein Ta1206-like › Hypothetical protein Ta1206-like › DUF1805 | 0.57 | 48.0 | 4.15e-01 | 94.6% | 96.6% |
| 5052205 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.57 | 48.0 | 2.78e-01 | 100.0% | 15.9% |
| 3928322 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 49.0 | 4.02e-01 | 96.4% | 88.6% |
| 3240745 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 42.0 | 2.64e-01 | 87.5% | 16.9% |
| 3952629 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.56 | 45.0 | 2.94e-01 | 100.0% | 18.2% |
| 3924545 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.56 | 45.0 | 3.73e-01 | 100.0% | 50.0% |
| 3388088 | 7580.1.1.1 ↗ | a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 | 0.55 | 43.0 | 3.31e-01 | 87.5% | 82.8% |
| 4169409 | 220.1.1.126 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 | 0.55 | 46.0 | 3.79e-01 | 100.0% | 71.1% |
| 3220069 | 5.1.4.147 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N | 0.55 | 46.0 | 2.84e-01 | 100.0% | 26.2% |
| 3627222 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.55 | 46.0 | 3.66e-01 | 100.0% | 76.0% |
| 337177 | 218.1.1.6 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › OSBS_N | 0.54 | 40.0 | 3.62e-01 | 85.7% | 95.2% |
| 3912274 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.53 | 38.0 | 3.65e-01 | 82.1% | 67.1% |
| 3597513 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 38.0 | 3.89e-01 | 96.4% | 83.6% |
| 4926953 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 38.0 | 3.24e-01 | 87.5% | 43.9% |
| 4462449 | 7580.1.1.1 ↗ | a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 | 0.52 | 42.0 | 3.23e-01 | 92.9% | 82.2% |
| 3438266 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.51 | 36.0 | 2.39e-01 | 75.0% | 33.3% |
| 5006851 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.51 | 42.0 | 3.97e-01 | 100.0% | 95.9% |