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NC_070958.1__YP_010668785.1__PQC08_gp238__00037
Bact-VirNC_070958.1__YP_010668785.1__PQC08_gp238__00037
Identity
- Accession:
- NC_070958 ↗
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Taxonomy
TaxID: 2593322
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-121
Domain cluster:
rep: NC_007623.1__YP_418050.1__PPEV_gp017__00017__D2-111
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dbgB02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.73 | 29.0 | 4.06e-01 | 96.7% | 73.8% |
| 7sebA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 19.0 | 3.03e-01 | 99.2% | 65.9% |
| 4ndhB00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.62 | 34.0 | 2.98e-01 | 100.0% | 36.0% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.62 | 41.0 | 4.74e-01 | 81.7% | 95.3% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 32.0 | 3.71e-01 | 79.2% | 69.2% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 30.0 | 3.31e-01 | 90.0% | 58.2% |
| 1x3aA00 | 1.10.3970.10 | Mainly Alpha › Orthogonal Bundle › BSD domain-like fold › BSD domain | 0.57 | 28.0 | 3.07e-01 | 80.8% | 54.0% |
| 2clqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 26.0 | 2.98e-01 | 100.0% | 55.3% |
| 3pf7B00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.56 | 42.0 | 2.85e-01 | 78.3% | 63.6% |
| 4m88A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 42.0 | 3.52e-01 | 80.0% | 82.5% |
| 4fppB01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.56 | 28.0 | 3.60e-01 | 76.7% | 83.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3788953 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.71 | 38.0 | 4.40e-01 | 72.5% | 71.1% |
| 4945443 | 2004.5.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain | 0.66 | 45.0 | 3.87e-01 | 70.0% | 88.9% |
| 5067753 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.65 | 55.0 | 4.39e-01 | 92.5% | 81.9% |
| 4279545 | 306.9.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › MecA substrate binding domain › MecA substrate binding domain › MecA | 0.64 | 35.0 | 4.19e-01 | 100.0% | 80.0% |
| 4429233 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.63 | 41.0 | 4.78e-01 | 73.3% | 92.9% |
| 4588023 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.62 | 49.0 | 3.77e-01 | 83.3% | 55.8% |
| 5057319 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.62 | 47.0 | 3.81e-01 | 81.7% | 49.2% |
| 4680974 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 41.0 | 4.49e-01 | 75.8% | 85.3% |
| 4433075 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 41.0 | 4.64e-01 | 75.8% | 92.2% |
| 3596042 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.60 | 42.0 | 4.04e-01 | 70.8% | 79.3% |
| 4590389 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.60 | 44.0 | 4.03e-01 | 75.8% | 74.8% |
| 4991609 | 101.1.2.178 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_61 | 0.59 | 41.0 | 4.60e-01 | 70.8% | 98.9% |
| 4998150 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.55 | 42.0 | 3.49e-01 | 80.0% | 59.5% |
| 3684538 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 40.0 | 3.68e-01 | 78.3% | 72.5% |
| 3452483 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 40.0 | 3.42e-01 | 76.7% | 74.1% |
| 4937624 | 3755.1.1.32 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › ATP-synt_D | 0.53 | 38.0 | 3.39e-01 | 75.0% | 57.7% |
| 3674754 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.53 | 34.0 | 2.98e-01 | 100.0% | 44.0% |
| 3403299 | 358.1.1.0 ↗ | a+b complex topology › SRCR-like › SRCR-like › SRCR-like | 0.52 | 26.0 | 3.48e-01 | 100.0% | 94.9% |
| 3356778 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.52 | 37.0 | 3.45e-01 | 74.2% | 80.6% |
| 3912477 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.51 | 46.0 | 3.35e-01 | 97.5% | 78.4% |
| 3231391 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.50 | 44.0 | 3.49e-01 | 95.0% | 89.6% |