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NC_070958.1__YP_010668886.1__PQC08_gp137__00138

Bact-Vir

NC_070958.1__YP_010668886.1__PQC08_gp137__00138

Identity

Accession:
NC_070958 ↗
Kingdom:
phage

Quality

72.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Ludhianavirus› Aeromonas_phage_D6

TaxID: 2593322

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-119
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 32.0 4.39e-01 88.6% 83.9%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 31.0 3.61e-01 85.1% 64.1%
1lgyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 43.0 3.34e-01 76.3% 93.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 32.0 3.94e-01 70.2% 93.8%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 41.0 3.12e-01 79.8% 67.5%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.54 29.0 3.73e-01 84.2% 92.3%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.54 36.0 4.16e-01 92.1% 95.1%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 35.0 3.78e-01 77.2% 81.3%
3g7nB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 39.0 3.09e-01 78.1% 96.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.89e-01 77.2% 94.7%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.53 38.0 3.82e-01 75.4% 84.5%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.52 26.0 3.19e-01 73.7% 75.4%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 40.0 3.50e-01 82.5% 83.6%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 40.0 3.91e-01 83.3% 79.8%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.51 41.0 3.36e-01 86.0% 70.4%
2kzfA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 30.0 3.08e-01 86.0% 59.4%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.50 41.0 3.72e-01 89.5% 76.4%
3g16B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.54e-01 82.5% 67.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.61 32.0 3.96e-01 87.7% 81.4%
4575618 883.1.1.3 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.57 43.0 3.54e-01 80.7% 75.3%
3471678 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.56 43.0 3.81e-01 80.7% 86.7%
3932471 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 40.0 2.89e-01 76.3% 44.4%
3924122 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 41.0 2.97e-01 78.9% 49.7%
591 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.53 33.0 3.90e-01 78.1% 93.4%
3743452 247.1.1.8 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › RMMBL,Lactamase_B_6 0.53 39.0 2.90e-01 78.9% 47.0%
4853112 708.1.1.2 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.52 32.0 3.54e-01 88.6% 76.1%
4779630 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.52 26.0 3.19e-01 73.7% 75.4%
3931594 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 36.0 4.01e-01 74.6% 91.1%
4540367 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.52 44.0 3.19e-01 93.9% 99.7%
3618481 247.1.1.5 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C 0.51 39.0 2.80e-01 81.6% 49.6%
3674165 219.1.1.110 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.51 38.0 2.90e-01 78.9% 95.2%
3177342 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.50 41.0 3.95e-01 90.4% 84.4%
3499841 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 34.0 3.71e-01 73.7% 86.7%
6337 331.14.1.1 ↗ a+b two layers › TBP-like › RalF, C-terminal domain › RalF, C-terminal domain › RalF_SCD 0.50 41.0 3.72e-01 89.5% 76.4%