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NC_070958.1__YP_010668906.1__PQC08_gp117__00158

Bact-Vir

Identity

Accession:: NC_070958 ↗
Kingdom:: phage

Quality

76.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Ludhianavirus› Aeromonas_phage_D6

TaxID: 2593322

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-37_49-62

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5cbgA00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	45.0	3.54e-01	78.4%	47.1%
1zx3A01	1.10.287.1020	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like	0.53	43.0	3.58e-01	88.2%	58.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2865	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.53	43.0	3.57e-01	88.2%	58.1%

D2 medium residues 38-48_63-155_211-239

PDB

Domain cluster: representative

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3291398	378.1.1.20 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524	0.74	59.0	5.38e-01	84.2%	85.1%
185780	378.1.1.2 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH	0.70	43.0	4.92e-01	72.9%	83.5%
5016552	378.1.1.10 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4	0.58	41.0	4.48e-01	72.2%	98.2%
2485694	378.1.1.2 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH	0.58	39.0	3.95e-01	70.7%	68.7%
2449258	378.1.1.2 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH	0.56	39.0	3.62e-01	75.9%	57.3%

D3 medium residues 156-210

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2q0oC00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.61	46.0	4.17e-01	89.1%	90.7%
2gtsA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.60	48.0	4.45e-01	96.4%	92.2%
2d9iA00	3.30.1370.110	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.50	41.0	3.45e-01	94.5%	53.1%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4889193	2004.1.1.484 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab, ATP-synt_ab_C	0.67	59.0	3.73e-01	100.0%	20.5%
3780651	3602.1.1.0 ↗	alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain	0.66	54.0	5.24e-01	98.2%	89.2%
4232356	101.1.2.517 ↗	alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD	0.64	53.0	3.07e-01	92.7%	12.1%
3967403	622.4.1.0 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related	0.62	50.0	4.84e-01	98.2%	93.8%
3779360	192.5.1.0 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat	0.61	49.0	3.69e-01	98.2%	37.5%
4408647	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.60	48.0	4.08e-01	98.2%	61.9%
4950966	192.30.1.0 ↗	alpha bundles › Long alpha-hairpin › SepCysE N-terminal domain › SepCysE N-terminal domain	0.60	48.0	4.72e-01	98.2%	95.0%
3386554	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.59	47.0	4.38e-01	96.4%	73.3%
3968144	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.57	45.0	4.41e-01	98.2%	89.2%
3230678	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.57	46.0	3.46e-01	100.0%	82.4%
3402081	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.55	39.0	3.44e-01	78.2%	94.4%
4818504	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.55	42.0	3.29e-01	94.5%	47.3%
4020464	1203.1.2.4 ↗	alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › Vps55	0.55	45.0	3.58e-01	98.2%	48.1%
3947018	223.1.1.43 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › CusS	0.51	41.0	3.00e-01	98.2%	69.5%

D4 medium residues 240-338

PDB

D5 medium residues 489-523

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zc0D00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.74	51.0	3.20e-01	74.3%	14.4%
2yfkA02	3.40.50.1370	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase	0.66	48.0	3.05e-01	77.1%	37.8%
2iqcA00	1.25.40.490	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.63	49.0	3.19e-01	88.6%	41.0%
1icrA00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.61	47.0	2.87e-01	85.7%	15.3%
1jvnA02	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.60	48.0	2.91e-01	100.0%	44.3%
1t07A00	1.10.3880.10	Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX	0.60	48.0	3.57e-01	85.7%	43.2%
1k78I00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	45.0	3.82e-01	80.0%	74.1%
4ifaA01	3.40.33.10	Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP	0.56	48.0	2.89e-01	100.0%	25.4%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4988756	4163.1.1.1 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5	0.71	52.0	3.53e-01	80.0%	26.4%
4941834	4163.1.1.0 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like	0.66	49.0	3.43e-01	85.7%	25.2%
4132106	4337.1.1.0 ↗	a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain	0.61	45.0	3.46e-01	80.0%	36.3%
3713159	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.60	48.0	3.37e-01	91.4%	75.0%
3607082	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.59	48.0	3.60e-01	94.3%	57.8%
3193539	7015.1.1.1 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC	0.55	43.0	2.70e-01	85.7%	34.0%
3595721	5.1.4.169 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd	0.54	48.0	2.72e-01	100.0%	48.7%