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NC_070961.1__YP_010669489.1__PQC11_gp025__00025
Bact-VirNC_070961.1__YP_010669489.1__PQC11_gp025__00025
Identity
- Accession:
- NC_070961 ↗
- Kingdom:
- phage
Quality
92.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Scyllavirus›
Synechococcus_phage_S-H9-1
TaxID: 2783674
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-57
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.83 | 66.0 | 6.64e-01 | 100.0% | 85.4% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 70.0 | 5.86e-01 | 100.0% | 56.4% |
| 4qxbB00 | 6.10.280.250 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 63.0 | 5.71e-01 | 100.0% | 66.2% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 66.0 | 5.97e-01 | 100.0% | 71.9% |
| 8gtyA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.75 | 66.0 | 4.45e-01 | 100.0% | 27.7% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 67.0 | 5.98e-01 | 100.0% | 71.6% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.71 | 63.0 | 6.41e-01 | 95.8% | 100.0% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.69 | 61.0 | 6.05e-01 | 97.9% | 92.2% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.64 | 47.0 | 4.32e-01 | 81.2% | 72.3% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 51.0 | 4.63e-01 | 93.8% | 67.6% |
| 1rylA00 | 3.40.1760.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family | 0.62 | 55.0 | 3.82e-01 | 100.0% | 89.8% |
| 1ailA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.62 | 51.0 | 4.53e-01 | 93.8% | 90.0% |
| 1o4xA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 47.0 | 4.56e-01 | 93.8% | 75.9% |
| 2ch5B02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 50.0 | 3.40e-01 | 100.0% | 55.0% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.60 | 43.0 | 4.24e-01 | 83.3% | 87.3% |
| 1uhsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 43.0 | 4.28e-01 | 97.9% | 79.6% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.56 | 46.0 | 3.71e-01 | 91.7% | 51.0% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 45.0 | 4.03e-01 | 100.0% | 80.5% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.56 | 49.0 | 3.87e-01 | 100.0% | 64.6% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.55 | 40.0 | 3.85e-01 | 79.2% | 100.0% |
| 3hjlA03 | 1.20.5.2020 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 39.0 | 4.05e-01 | 81.2% | 97.6% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.54 | 44.0 | 3.45e-01 | 97.9% | 55.2% |
| 1j0tA00 | 1.10.2010.10 | Mainly Alpha › Orthogonal Bundle › Crustacean CHH/MIH/GIH neurohormone › Crustacean CHH/MIH/GIH neurohormone | 0.54 | 43.0 | 3.85e-01 | 100.0% | 82.1% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 40.0 | 3.83e-01 | 100.0% | 68.4% |
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 37.0 | 3.32e-01 | 75.0% | 52.1% |
| 2f33A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 42.0 | 3.76e-01 | 95.8% | 73.2% |
| 1e3oC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.50 | 34.0 | 3.48e-01 | 72.9% | 60.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3550403 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.80 | 66.0 | 5.06e-01 | 95.8% | 41.7% |
| 4018084 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.79 | 71.0 | 6.25e-01 | 100.0% | 84.3% |
| 1893012 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.78 | 62.0 | 5.08e-01 | 91.7% | 47.8% |
| 3088104 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.75 | 66.0 | 4.43e-01 | 100.0% | 27.3% |
| 3483570 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 62.0 | 5.00e-01 | 100.0% | 98.9% |
| 3331372 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.68 | 55.0 | 4.80e-01 | 100.0% | 62.4% |
| 3361064 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.68 | 50.0 | 4.30e-01 | 89.6% | 46.6% |
| 3127 | 130.1.1.7 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Endonuc-dimeris | 0.60 | 43.0 | 4.26e-01 | 83.3% | 88.9% |
| 3356746 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.56 | 41.0 | 2.96e-01 | 87.5% | 25.2% |
| 4991581 | 103.1.1.19 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HYPK_UBA | 0.56 | 43.0 | 4.31e-01 | 85.4% | 79.6% |
| 3930619 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.55 | 44.0 | 4.38e-01 | 87.5% | 82.0% |
| 3022565 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.54 | 32.0 | 3.45e-01 | 70.8% | 68.3% |
| 140485 | 103.1.1.91 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28552 | 0.53 | 37.0 | 3.32e-01 | 75.0% | 52.1% |
| 3272149 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.53 | 32.0 | 3.29e-01 | 77.1% | 64.4% |
| 3483851 | 103.1.1.84 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28540 | 0.52 | 33.0 | 3.39e-01 | 79.2% | 68.9% |
| 3227458 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.50 | 36.0 | 3.53e-01 | 91.7% | 68.3% |