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NC_070961.1__YP_010669495.1__PQC11_gp031__00031

Bact-Vir

Identity

Accession:: NC_070961 ↗
Kingdom:: phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Scyllavirus› Synechococcus_phage_S-H9-1

TaxID: 2783674

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-74_115-244

PDB

Domain cluster: rep: IMGVR_UViG_3300038731_000004-3300038731-Ga0188182_0385_87_965__D13-224

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hqsA01	3.40.50.10070	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain	0.58	40.0	4.29e-01	88.2%	82.4%
4nkbA01	3.30.1120.120	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.56	29.0	3.39e-01	74.7%	69.3%
1s3rA03	3.40.30.40	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Perfringolysin	0.54	34.0	3.89e-01	91.8%	83.7%
1ut7B01	2.170.150.80	Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain	0.53	25.0	2.84e-01	86.5%	56.0%
4e72A01	3.30.565.40	Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like	0.53	30.0	3.45e-01	81.8%	75.0%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4522823	2008.1.1.194 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_MamI	0.83	73.0	6.33e-01	91.2%	77.1%
3606640	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.60	35.0	4.25e-01	84.7%	87.3%
5069695	330.2.1.5 ↗	a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181	0.57	29.0	3.50e-01	88.8%	73.4%
4642685	7503.1.1.3 ↗	a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N	0.57	37.0	4.19e-01	88.2%	87.2%
3965860	3523.1.1.1 ↗	beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG	0.56	31.0	3.87e-01	87.6%	88.0%
4937410	330.2.1.0 ↗	a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue)	0.56	28.0	3.61e-01	88.2%	83.2%
3164479	3523.1.1.1 ↗	beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG	0.55	30.0	3.87e-01	86.5%	92.6%
3272654	11.1.4.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like	0.53	28.0	3.40e-01	75.3%	81.0%
3727039	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.52	43.0	3.72e-01	88.2%	59.6%
3991111	11.1.1.179 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3	0.52	22.0	2.64e-01	88.8%	52.2%
5029238	330.2.1.0 ↗	a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue)	0.51	28.0	3.50e-01	88.8%	88.0%
5020942	7503.1.1.0 ↗	a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain	0.51	39.0	3.95e-01	88.8%	79.4%
5056130	330.2.1.0 ↗	a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue)	0.51	27.0	3.44e-01	88.2%	89.5%
4039199	2492.1.1.2 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB	0.51	41.0	3.67e-01	86.5%	77.2%