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NC_070962.1__YP_010669889.1__PQC12_gp176__00196

Bact-Vir

NC_070962.1__YP_010669889.1__PQC12_gp176__00196

Identity

Accession:
NC_070962 ↗
Kingdom:
phage

Quality

96.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Zhoulongquanvirus› Synechococcus_phage_S-SCSM1

TaxID: 2588487

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-60_128-185
PDB
Domain cluster: rep: IMGVR_UViG_3300042094_000363-3300042094-Ga0453242_007407_1_669__D52-217
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF16861.11 best Carbam_trans_C 39.7 5.40e-10 49.1% 30.0%
PF16861.11 Carbam_trans_C 50.2 3.10e-13 42.4% 28.2%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7vyjA01 3.90.870.20 Alpha Beta › Alpha-Beta Complex › DHBP synthase › Carbamoyltransferase, C-terminal domain 0.93 90.0 7.19e-01 100.0% 90.3%
3vezA03 3.90.870.20 Alpha Beta › Alpha-Beta Complex › DHBP synthase › Carbamoyltransferase, C-terminal domain 0.93 89.0 7.14e-01 99.2% 88.8%
3ttcA01 3.90.870.30 Alpha Beta › Alpha-Beta Complex › DHBP synthase › 0.77 68.0 5.56e-01 94.9% 53.7%
3vtiA03 3.90.870.40 Alpha Beta › Alpha-Beta Complex › DHBP synthase › 0.74 65.0 6.53e-01 94.9% 90.9%
1hruA00 3.90.870.10 Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase 0.74 64.0 5.37e-01 90.7% 88.7%
1k7jA00 3.90.870.10 Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase 0.71 62.0 5.12e-01 94.1% 84.9%
1pvwA00 3.90.870.10 Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase 0.68 57.0 4.65e-01 91.5% 98.2%
1r26A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 33.0 3.41e-01 96.6% 54.9%
5ykwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 33.0 3.49e-01 95.8% 60.4%
2h8gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 41.0 3.34e-01 89.0% 87.8%
2ewvA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.51e-01 94.9% 73.0%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.50 28.0 3.55e-01 100.0% 96.9%
7du3B02 3.90.650.10 Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain 0.50 34.0 3.23e-01 70.3% 93.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4289793 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.94 91.0 7.01e-01 100.0% 89.1%
3604306 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.93 90.0 7.17e-01 100.0% 88.0%
1503102 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.93 90.0 7.13e-01 100.0% 87.1%
4324811 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.93 89.0 7.21e-01 100.0% 89.5%
3972056 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.92 88.0 6.90e-01 100.0% 83.5%
4972644 297.1.1.0 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB 0.91 88.0 7.06e-01 100.0% 89.8%
3604154 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.91 87.0 6.93e-01 99.2% 86.7%
4115425 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.88 85.0 6.94e-01 100.0% 90.8%
4168933 297.1.1.2 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC 0.74 64.0 5.24e-01 89.8% 82.8%
4428654 297.1.1.2 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC 0.72 63.0 5.37e-01 91.5% 89.4%
4376572 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.66 37.0 4.78e-01 85.6% 100.0%
4971832 297.1.1.1 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.65 56.0 4.57e-01 94.1% 97.7%
336465 2485.1.1.26 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › HyaE 0.52 29.0 2.86e-01 95.8% 47.0%
D2 medium residues 61-127
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16861.11 best Carbam_trans_C 73.4 2.30e-20 100.0% 37.6%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vezA03 3.90.870.20 Alpha Beta › Alpha-Beta Complex › DHBP synthase › Carbamoyltransferase, C-terminal domain 0.95 88.0 5.94e-01 100.0% 31.7%
7vyjA01 3.90.870.20 Alpha Beta › Alpha-Beta Complex › DHBP synthase › Carbamoyltransferase, C-terminal domain 0.93 88.0 6.00e-01 100.0% 33.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604154 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.96 89.0 6.00e-01 100.0% 31.0%
3604306 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.94 87.0 5.87e-01 100.0% 31.1%
4289793 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.93 89.0 5.83e-01 100.0% 37.0%
4324811 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.93 82.0 5.64e-01 100.0% 31.5%
1503102 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.92 84.0 5.72e-01 100.0% 31.0%
4115425 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.91 84.0 5.78e-01 100.0% 33.3%
4972644 297.1.1.0 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB 0.91 83.0 5.66e-01 100.0% 31.7%
3972056 297.1.1.3 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Carbam_trans_C 0.89 84.0 5.60e-01 100.0% 30.4%
4355330 297.1.1.2 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC 0.74 66.0 4.59e-01 100.0% 33.2%
5058471 297.1.1.2 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC 0.73 65.0 4.60e-01 100.0% 34.5%
4317542 297.1.1.0 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB 0.70 62.0 4.54e-01 100.0% 38.3%
5011147 304.131.1.0 ↗ a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain 0.52 39.0 3.68e-01 89.6% 92.6%
3687728 610.2.1.0 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 0.50 38.0 2.68e-01 86.6% 45.7%