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NC_070963.1__YP_010670056.1__PQC13_gp081__00081

Bact-Vir

NC_070963.1__YP_010670056.1__PQC13_gp081__00081

Identity

Accession:
NC_070963 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Serangoonvirus› Synechococcus_phage_S-SRM01

TaxID: 2781608

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.68 47.0 4.07e-01 73.2% 49.4%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.66 57.0 4.65e-01 100.0% 55.6%
2iexA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.64 43.0 4.51e-01 73.2% 78.4%
2gnoA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.64 51.0 4.30e-01 100.0% 51.0%
2ajrA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 46.0 2.92e-01 80.4% 89.4%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.60 45.0 3.09e-01 82.1% 72.2%
2is6A04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.58 40.0 2.97e-01 73.2% 25.5%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.58 45.0 3.97e-01 87.5% 100.0%
2lvfA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.58 47.0 3.91e-01 100.0% 51.8%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.58 47.0 4.57e-01 98.2% 89.6%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.57 46.0 3.64e-01 98.2% 50.0%
7p5hB03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.57 43.0 3.84e-01 87.5% 97.8%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 3.79e-01 100.0% 71.2%
3we0A03 1.10.405.40 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › 0.57 48.0 3.73e-01 100.0% 65.7%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.57 48.0 4.32e-01 100.0% 96.3%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.55 42.0 3.81e-01 85.7% 62.2%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.55 44.0 4.42e-01 98.2% 91.2%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 46.0 3.80e-01 100.0% 63.3%
2o36A01 1.20.1050.40 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 0.54 46.0 3.64e-01 100.0% 61.7%
2d9jA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.54 44.0 4.07e-01 100.0% 88.6%
2afaA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 46.0 2.79e-01 100.0% 16.7%
3fvvA02 1.20.1440.100 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function 0.53 44.0 4.11e-01 100.0% 81.3%
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.51 41.0 3.68e-01 89.3% 63.3%
1n0uA03 3.90.1430.10 Alpha Beta › Alpha-Beta Complex › Yeast translation eEF2 (G' domain) › Yeast translation eEF2 (G' domain) 0.51 36.0 3.07e-01 78.6% 97.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3177086 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 54.0 3.17e-01 98.2% 9.6%
3215866 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 50.0 5.08e-01 100.0% 83.6%
2979253 632.21.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › EndoS_helical 0.62 41.0 3.87e-01 94.6% 55.7%
3618872 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.59 50.0 3.37e-01 100.0% 33.6%
3636226 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 50.0 3.26e-01 98.2% 48.8%
4945748 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.56 39.0 3.42e-01 75.0% 64.4%
3738995 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.56 40.0 3.86e-01 76.8% 72.3%
5027767 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.56 48.0 3.98e-01 100.0% 99.0%
4309285 3844.2.1.2 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.52 43.0 3.10e-01 98.2% 48.1%
4032282 101.1.4.29 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF2316 0.52 43.0 3.81e-01 94.6% 90.6%
3716217 3718.1.1.0 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.51 43.0 3.75e-01 98.2% 70.0%