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NC_070965.1__YP_010670580.1__PQC15_gp041__00041

Bact-Vir

NC_070965.1__YP_010670580.1__PQC15_gp041__00041

Identity

Accession:
NC_070965 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Makaravirus› Synechococcus_phage_S-H34

TaxID: 2718942

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-85
PDB
Domain cluster: rep: NC_006883.2__YP_214329.1__PSSM2_097__00094__D10-101
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25590.2 best DUF7936 41.9 2.00e-10 100.0% 82.5%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 39.0 3.58e-01 84.5% 42.6%
3ck1A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 47.0 3.84e-01 70.2% 41.3%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 46.0 5.12e-01 100.0% 96.8%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 36.0 4.07e-01 78.6% 70.8%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 41.0 3.69e-01 92.9% 49.1%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 48.0 4.35e-01 83.3% 74.8%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.60 42.0 3.89e-01 95.2% 57.0%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 38.0 3.97e-01 100.0% 70.7%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 41.0 3.61e-01 92.9% 46.2%
5tfqA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 44.0 3.19e-01 100.0% 24.9%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 52.0 4.68e-01 100.0% 90.6%
2qddA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 52.0 4.49e-01 100.0% 82.3%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 49.0 3.82e-01 94.0% 86.7%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.59e-01 94.0% 48.1%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 36.0 2.72e-01 84.5% 25.0%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 4.17e-01 83.3% 76.9%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 51.0 4.44e-01 100.0% 82.9%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 47.0 4.40e-01 100.0% 73.5%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.57 46.0 3.93e-01 88.1% 84.6%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.57 48.0 3.82e-01 91.7% 54.8%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 51.0 4.43e-01 100.0% 82.7%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 51.0 4.58e-01 100.0% 92.3%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.64e-01 91.7% 46.4%
5aq1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 38.0 2.67e-01 70.2% 54.8%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 42.0 3.47e-01 83.3% 45.8%
4bnqB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.56 48.0 3.80e-01 100.0% 64.6%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 51.0 4.29e-01 100.0% 74.5%
3e4wA02 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.56 49.0 3.74e-01 100.0% 83.6%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.55 44.0 3.72e-01 89.3% 52.6%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 49.0 4.25e-01 100.0% 78.5%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 43.0 3.31e-01 85.7% 61.4%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.58e-01 100.0% 51.9%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.55 46.0 3.93e-01 96.4% 56.6%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.53e-01 86.9% 53.4%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 36.0 3.44e-01 100.0% 56.4%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 3.22e-01 89.3% 47.2%
2q2rA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 37.0 3.02e-01 91.7% 35.3%
1dt9A01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.54 37.0 3.48e-01 71.4% 100.0%
6ksrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 40.0 3.31e-01 92.9% 42.5%
4jdzA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.58e-01 91.7% 84.8%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 3.99e-01 85.7% 86.3%
3px5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 47.0 4.27e-01 100.0% 92.2%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 46.0 3.51e-01 100.0% 45.8%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.24e-01 89.3% 45.8%
3lyrA00 2.60.40.3180 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription factor COE1, DNA-binding domain 0.52 40.0 3.09e-01 85.7% 66.4%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.99e-01 84.5% 82.2%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 3.06e-01 100.0% 75.1%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 44.0 3.57e-01 100.0% 97.7%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.51 42.0 3.78e-01 91.7% 66.7%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 39.0 3.29e-01 83.3% 51.4%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 39.0 3.70e-01 91.7% 69.6%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589803 2484.1.1.144 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.77 46.0 4.36e-01 91.7% 51.0%
3819740 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.77 49.0 4.78e-01 96.4% 60.0%
3805804 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.76 48.0 4.84e-01 96.4% 63.5%
3216612 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 40.0 3.04e-01 79.8% 24.3%
None — 0.70 41.0 2.79e-01 79.8% 17.2%
4939185 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 54.0 4.81e-01 98.8% 59.2%
3430377 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 50.0 4.92e-01 96.4% 73.3%
3704966 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.68 46.0 4.49e-01 92.9% 64.4%
3262206 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.65 50.0 4.04e-01 97.6% 42.5%
3330582 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 53.0 4.62e-01 97.6% 59.2%
3786132 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.64 55.0 4.59e-01 100.0% 54.5%
3591129 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.64 44.0 2.98e-01 86.9% 18.8%
3320817 2004.1.1.174 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 0.63 44.0 2.99e-01 84.5% 21.0%
169507 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.63 41.0 3.70e-01 92.9% 49.1%
3808882 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.61 54.0 4.27e-01 100.0% 50.3%
3838060 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.60 53.0 4.30e-01 100.0% 52.7%
3980178 7503.1.1.13 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › Lipoprotein_16 0.60 53.0 4.24e-01 100.0% 51.8%
5053329 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.82e-01 97.6% 52.5%
3223708 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 41.0 3.59e-01 89.3% 49.2%
3279764 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 42.0 4.52e-01 94.0% 88.6%
3279044 2.1.1.314 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27099 0.59 39.0 4.31e-01 89.3% 87.7%
4998750 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.59 50.0 4.54e-01 98.8% 68.7%
4158607 71.1.1.5 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF576 0.58 40.0 2.93e-01 71.4% 75.7%
3708804 2484.1.1.167 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CHAT 0.58 49.0 3.83e-01 91.7% 70.3%
3729692 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 44.0 3.75e-01 98.8% 46.5%
None — 0.57 43.0 2.87e-01 81.0% 22.0%
3288634 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.57 45.0 4.27e-01 100.0% 72.0%
3560129 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.57 45.0 3.91e-01 84.5% 58.4%
165020 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.56 50.0 4.40e-01 100.0% 81.0%
3923143 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.55 37.0 2.73e-01 70.2% 57.9%
3976326 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.55 45.0 3.50e-01 91.7% 41.1%
3511040 2485.2.1.1 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.55 45.0 4.31e-01 90.5% 97.0%
3300991 2485.2.1.1 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.55 48.0 4.28e-01 97.6% 97.5%
5029975 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.55 44.0 4.17e-01 86.9% 72.0%
162532 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.55 43.0 3.27e-01 85.7% 58.7%
4942385 2485.2.1.1 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.55 45.0 4.31e-01 91.7% 96.0%
6400 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 36.0 3.27e-01 89.3% 49.2%
3733248 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 44.0 3.54e-01 98.8% 45.6%
5069420 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.01e-01 96.4% 85.9%
3234917 2484.1.1.45 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CAF1 0.54 47.0 3.17e-01 98.8% 70.4%
3179348 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 42.0 3.21e-01 85.7% 59.6%
3396974 2485.2.1.1 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.53 45.0 4.26e-01 96.4% 97.1%
3950922 243.1.1.80 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.52 39.0 3.55e-01 88.1% 57.5%
3261242 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 40.0 3.16e-01 85.7% 63.2%
4121826 220.1.1.127 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_GEF_YEL1 0.52 36.0 2.91e-01 90.5% 36.4%
5069194 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.96e-01 91.7% 78.9%
3581555 633.33.1.1 ↗ alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz 0.51 40.0 2.84e-01 86.9% 44.9%
4970307 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.82e-01 90.5% 84.3%
4026241 2485.2.1.0 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.51 45.0 4.18e-01 100.0% 95.5%
4417360 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 40.0 3.15e-01 88.1% 81.5%
None — 0.50 37.0 2.55e-01 79.8% 48.8%
4928536 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.50 38.0 3.03e-01 81.0% 68.8%