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NC_070965.1__YP_010670586.1__PQC15_gp047__00047

Bact-Vir

NC_070965.1__YP_010670586.1__PQC15_gp047__00047

Identity

Accession:
NC_070965 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Makaravirus› Synechococcus_phage_S-H34

TaxID: 2718942

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-82
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 49.0 3.84e-01 72.5% 81.8%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 48.0 3.16e-01 72.5% 47.6%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 53.0 3.32e-01 85.0% 42.3%
2druA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 48.0 3.69e-01 100.0% 31.1%
1cduA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 46.0 3.52e-01 100.0% 29.6%
4bfiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 49.0 3.61e-01 100.0% 30.4%
3p2hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 47.0 3.07e-01 77.5% 54.9%
1o12B01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.64 45.0 3.91e-01 80.0% 73.6%
3u83A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 52.0 3.82e-01 100.0% 34.9%
4grfA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 44.0 3.15e-01 80.0% 84.3%
5yxkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 48.0 3.58e-01 100.0% 31.8%
4ye4H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 52.0 3.76e-01 100.0% 44.4%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.59 52.0 2.83e-01 100.0% 7.1%
2qkxA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 38.0 2.42e-01 72.5% 29.4%
2ggoA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 41.0 2.83e-01 100.0% 70.5%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 48.0 3.74e-01 100.0% 88.8%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.55 38.0 2.48e-01 82.5% 18.5%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 37.0 2.70e-01 72.5% 24.3%
7jptA06 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 42.0 3.14e-01 95.0% 87.9%
4cooA03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 36.0 2.71e-01 80.0% 39.4%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.52 44.0 3.04e-01 100.0% 49.4%
4l1dC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.14e-01 97.5% 49.5%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 37.0 2.95e-01 80.0% 49.5%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.02e-01 97.5% 97.7%
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.51 36.0 2.67e-01 70.0% 73.8%
2p38A02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.50 34.0 3.01e-01 72.5% 55.4%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.50 33.0 2.47e-01 70.0% 46.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3903501 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 55.0 3.85e-01 80.0% 26.7%
3283322 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.71 49.0 3.20e-01 72.5% 53.3%
3287619 207.2.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.69 56.0 3.17e-01 90.0% 8.9%
4499276 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.67 59.0 4.71e-01 100.0% 53.8%
1117604 79.1.1.2 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 0.66 58.0 3.88e-01 100.0% 47.1%
3932040 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.65 57.0 4.56e-01 100.0% 61.3%
2754026 79.1.1.2 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 0.65 57.0 3.43e-01 100.0% 26.8%
3583042 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.65 57.0 3.89e-01 100.0% 31.4%
3411216 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.64 55.0 4.15e-01 100.0% 48.0%
3882932 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 54.0 4.01e-01 100.0% 46.7%
4010839 65.1.1.3 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Amidohydro_1 0.62 42.0 2.84e-01 72.5% 17.0%
3984133 3735.1.1.12 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.61 53.0 2.84e-01 100.0% 4.1%
4007747 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.60 53.0 2.81e-01 100.0% 3.7%
3915512 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.60 51.0 2.70e-01 100.0% 4.0%
4429348 2484.1.1.311 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, DDR, FtsA 0.60 42.0 2.46e-01 75.0% 14.5%
3994857 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 46.0 4.23e-01 87.5% 81.8%
4210618 3735.1.1.12 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.59 50.0 2.84e-01 100.0% 8.6%
4230707 79.1.1.32 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › RHS_repeat, TEN_YD-shell 0.59 52.0 3.02e-01 100.0% 11.8%
3559914 3735.1.1.0 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein 0.59 49.0 2.59e-01 100.0% 2.6%
None — 0.58 48.0 2.54e-01 100.0% 2.6%
3864387 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.57 48.0 3.46e-01 100.0% 41.6%
3930372 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.49e-01 100.0% 61.0%
4845616 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.56 42.0 4.09e-01 72.5% 70.5%
3935786 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.66e-01 85.0% 81.5%
3239118 1013.1.1.0 ↗ beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain 0.55 45.0 2.97e-01 97.5% 35.3%
4564300 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.55 40.0 3.33e-01 80.0% 70.0%
4169248 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.55 41.0 2.81e-01 97.5% 68.0%
5046458 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.54 47.0 3.08e-01 100.0% 35.4%
3736412 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 42.0 2.53e-01 87.5% 15.3%
5037861 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.53 42.0 3.52e-01 95.0% 80.0%
3915577 11.1.1.852 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.52 39.0 2.76e-01 100.0% 40.0%
1237900 2007.1.7.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.52 38.0 2.64e-01 85.0% 26.7%
3721156 2003.1.2.60 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO, NAD_binding_8 0.52 40.0 2.34e-01 100.0% 96.0%
4016860 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.51 36.0 3.33e-01 80.0% 56.9%
3954692 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.51 35.0 2.66e-01 72.5% 36.2%
4182115 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.50 39.0 2.78e-01 100.0% 44.4%