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NC_070965.1__YP_010670595.1__PQC15_gp056__00056

Bact-Vir

NC_070965.1__YP_010670595.1__PQC15_gp056__00056

Identity

Accession:
NC_070965 ↗
Kingdom:
phage

Quality

95.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Makaravirus› Synechococcus_phage_S-H34

TaxID: 2718942

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7dniC02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.74 65.0 5.67e-01 100.0% 72.3%
2lwdA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.72 64.0 5.55e-01 100.0% 71.9%
2yviA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.68 58.0 5.23e-01 100.0% 77.5%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 45.0 4.11e-01 71.0% 66.3%
1dgnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 57.0 5.11e-01 100.0% 79.8%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 44.0 4.08e-01 71.0% 65.1%
2l3wA01 1.10.3130.20 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain 0.65 52.0 4.19e-01 90.3% 64.8%
2ky4A01 1.10.3130.20 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain 0.65 52.0 4.15e-01 90.3% 61.1%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 47.0 4.27e-01 77.4% 80.7%
1sxjC02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 43.0 4.25e-01 71.0% 73.9%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.64 46.0 3.91e-01 79.0% 83.6%
1iqpA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 43.0 4.31e-01 71.0% 76.6%
3bgeA01 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.63 48.0 4.29e-01 87.1% 75.0%
3nynA03 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.62 47.0 4.36e-01 83.9% 90.1%
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.62 49.0 4.97e-01 90.3% 100.0%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.61 45.0 3.86e-01 80.6% 89.4%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.59 43.0 4.10e-01 80.6% 98.7%
2qq8A03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.59 49.0 3.86e-01 98.4% 58.3%
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.59 45.0 2.99e-01 87.1% 95.9%
1iv8A04 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.59 43.0 3.77e-01 79.0% 73.2%
3qwlA03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.59 49.0 3.95e-01 98.4% 62.5%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.58 40.0 4.20e-01 72.6% 81.8%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.58 47.0 3.73e-01 93.5% 87.9%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 40.0 3.20e-01 72.6% 52.8%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.57 38.0 3.56e-01 71.0% 84.1%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.54 41.0 3.89e-01 83.9% 93.4%
3c8zA02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.53 46.0 4.21e-01 98.4% 94.0%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 39.0 3.78e-01 90.3% 81.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3870886 110.1.1.11 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › HSR 0.77 67.0 5.60e-01 100.0% 64.5%
3887209 110.1.1.7 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD_2 0.76 68.0 5.83e-01 100.0% 70.0%
3550990 110.1.1.7 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD_2 0.75 66.0 5.69e-01 100.0% 69.0%
3499447 110.1.1.7 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD_2 0.74 66.0 4.67e-01 100.0% 38.9%
3874335 110.1.1.7 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD_2 0.74 66.0 5.55e-01 100.0% 65.7%
3616439 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.70 60.0 5.07e-01 100.0% 70.9%
3266296 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.65 52.0 4.06e-01 88.7% 61.4%
5047076 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.65 56.0 3.54e-01 100.0% 25.8%
3959026 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 44.0 4.01e-01 71.0% 68.2%
3386877 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.64 50.0 3.71e-01 85.5% 63.1%
3890431 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.62 53.0 4.62e-01 100.0% 71.0%
5062132 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 47.0 3.39e-01 87.1% 44.0%
3633948 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.61 51.0 4.20e-01 98.4% 71.8%
3806242 103.1.1.56 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_DHX29 0.61 42.0 4.01e-01 74.2% 65.3%
3753165 524.1.1.5 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › BROMI_C 0.59 49.0 3.81e-01 98.4% 54.8%
3187353 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.59 43.0 4.44e-01 82.3% 88.3%
3693983 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 45.0 3.40e-01 83.9% 60.0%
4085071 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.58 45.0 3.44e-01 87.1% 36.7%
1155488 632.2.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA 0.57 40.0 4.02e-01 72.6% 72.6%
5019066 3415.1.1.4 ↗ alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate 0.56 48.0 3.15e-01 100.0% 66.3%
4024200 4953.1.1.19 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › RIFIN 0.54 40.0 3.21e-01 82.3% 38.6%
3189445 7087.1.1.1 ↗ alpha bundles › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › EBP 0.51 40.0 2.93e-01 91.9% 86.7%