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NC_070966.1__YP_010670870.1__PQC16_gp085__00085

Bact-Vir

NC_070966.1__YP_010670870.1__PQC16_gp085__00085

Identity

Accession:
NC_070966 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskaviridae› Cuauhnahuacvirus› Rhizobium_phage_RHph_TM30

TaxID: 2509764

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-128
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 37.0 5.06e-01 88.6% 100.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 36.0 4.81e-01 91.4% 92.6%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.71 35.0 4.73e-01 89.5% 98.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 37.0 4.92e-01 88.6% 96.4%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 35.0 4.81e-01 90.5% 100.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 37.0 4.92e-01 89.5% 98.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 37.0 4.34e-01 92.4% 75.3%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 35.0 4.41e-01 88.6% 88.1%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 36.0 3.87e-01 98.1% 62.2%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 40.0 4.44e-01 92.4% 78.6%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 36.0 4.15e-01 91.4% 77.2%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.61 38.0 3.81e-01 92.4% 59.6%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 36.0 4.04e-01 92.4% 76.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 35.0 4.25e-01 89.5% 91.0%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 45.0 3.72e-01 93.3% 44.9%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 34.0 4.28e-01 93.3% 96.9%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 33.0 3.19e-01 90.5% 47.2%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 40.0 3.96e-01 72.4% 100.0%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.56 31.0 3.62e-01 83.8% 77.5%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.55e-01 100.0% 96.4%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.86e-01 92.4% 95.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.55 37.0 3.83e-01 96.2% 73.0%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.55 37.0 3.54e-01 74.3% 59.2%
2xu8A00 3.90.70.190 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) 0.54 35.0 3.45e-01 90.5% 60.3%
5ksdA04 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.51 36.0 3.26e-01 73.3% 56.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.51 32.0 3.90e-01 96.2% 100.0%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.50 42.0 4.15e-01 100.0% 85.3%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 4.33e-01 100.0% 95.8%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 35.0 3.78e-01 94.3% 86.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 37.0 4.69e-01 88.6% 75.4%
3945489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 37.0 5.24e-01 88.6% 100.0%
3617111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 37.0 4.01e-01 92.4% 57.8%
4645538 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.72 41.0 4.80e-01 87.6% 78.7%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.71 38.0 5.08e-01 92.4% 100.0%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.71 40.0 4.81e-01 100.0% 82.9%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 37.0 4.09e-01 88.6% 62.4%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 37.0 4.98e-01 89.5% 98.2%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 39.0 4.84e-01 89.5% 89.2%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 38.0 4.89e-01 93.3% 93.3%
3786430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 35.0 4.80e-01 88.6% 100.0%
3784334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 35.0 4.52e-01 88.6% 85.0%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 38.0 4.70e-01 93.3% 86.2%
3854862 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 37.0 3.89e-01 92.4% 56.8%
3922426 4.1.1.363 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.69 40.0 3.85e-01 93.3% 50.8%
5022659 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 38.0 4.44e-01 89.5% 77.3%
4014881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 38.0 4.87e-01 87.6% 96.7%
3571487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 37.0 4.38e-01 89.5% 78.1%
3629316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 42.0 4.29e-01 93.3% 65.0%
3642001 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 43.0 5.13e-01 92.4% 98.6%
3699652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.81e-01 92.4% 93.8%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.35e-01 92.4% 72.9%
3992026 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.66 34.0 4.27e-01 72.4% 81.5%
3248403 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 34.0 3.09e-01 97.1% 39.3%
3233461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 36.0 4.60e-01 87.6% 96.7%
3616622 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 37.0 4.62e-01 90.5% 96.8%
3941004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 39.0 4.41e-01 92.4% 82.5%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 39.0 4.57e-01 92.4% 92.0%
3968865 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 34.0 3.55e-01 77.1% 60.0%
3251414 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.05e-01 89.5% 66.4%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.60 38.0 4.19e-01 100.0% 80.0%
3387378 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 40.0 4.39e-01 91.4% 84.7%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 38.0 4.18e-01 89.5% 81.2%
4000819 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.58 32.0 3.84e-01 81.0% 80.0%
3398841 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.58 33.0 3.92e-01 73.3% 84.1%
3220929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 36.0 4.12e-01 92.4% 88.0%
5000784 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.56 38.0 3.91e-01 93.3% 72.0%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 35.0 4.08e-01 89.5% 89.2%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.22e-01 90.5% 83.0%
3514522 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.55 36.0 4.20e-01 91.4% 93.3%
3416385 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.54 40.0 3.27e-01 78.1% 94.4%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 4.19e-01 95.2% 97.5%
3668420 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.51 39.0 3.16e-01 93.3% 44.2%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 38.0 4.19e-01 97.1% 98.8%
4993609 873.1.1.19 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › MetOD1 0.51 35.0 2.96e-01 70.5% 54.0%
3978775 4200.1.1.1 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › YjbF 0.50 41.0 3.37e-01 88.6% 83.4%