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NC_070967.1__YP_010671209.1__PQC17_gp060__00060

Bact-Vir

NC_070967.1__YP_010671209.1__PQC17_gp060__00060

Identity

Accession:
NC_070967 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskaviridae› Cuauhnahuacvirus› Rhizobium_phage_RHph_Y65

TaxID: 2509785

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wiaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 53.0 4.97e-01 94.7% 100.0%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.62 51.0 4.32e-01 98.2% 86.0%
2c61A00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 42.0 2.46e-01 100.0% 9.3%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 54.0 4.67e-01 100.0% 95.6%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 53.0 3.40e-01 100.0% 31.4%
1wh3A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 50.0 4.71e-01 93.0% 100.0%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 50.0 4.44e-01 93.0% 100.0%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 51.0 4.36e-01 100.0% 98.9%
6djwA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 49.0 4.55e-01 96.5% 100.0%
1gg3A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 49.0 4.49e-01 98.2% 100.0%
7pyvC02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 47.0 4.42e-01 91.2% 100.0%
2mlbA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 49.0 4.47e-01 98.2% 92.4%
6pqmA01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.57 44.0 4.25e-01 82.5% 77.8%
2v1yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 51.0 4.39e-01 100.0% 97.8%
2ww8A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.76e-01 96.5% 97.6%
3p1mA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.57 49.0 3.86e-01 100.0% 84.1%
3lxfA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.57 48.0 4.01e-01 98.2% 100.0%
2jrrA01 2.60.260.40 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › q5lls5 like domains 0.56 35.0 3.60e-01 82.5% 66.0%
2gbmA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 48.0 4.36e-01 98.2% 100.0%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 43.0 4.22e-01 100.0% 79.0%
1ze3D00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.56 47.0 3.84e-01 100.0% 75.9%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.55 43.0 3.95e-01 93.0% 85.5%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.55 45.0 3.79e-01 100.0% 60.4%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.54 43.0 3.81e-01 100.0% 84.0%
1c1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 47.0 4.31e-01 100.0% 100.0%
2peeB02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 45.0 3.53e-01 96.5% 93.1%
1kqrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 36.0 2.79e-01 73.7% 68.8%
4ifdI01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 34.0 3.09e-01 70.2% 79.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3582056 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.62 55.0 4.17e-01 100.0% 93.3%
4420315 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.60 40.0 4.16e-01 86.0% 78.0%
3569553 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 52.0 4.52e-01 100.0% 86.7%
3287453 80.1.1.0 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain 0.59 45.0 3.79e-01 98.2% 49.5%
4942565 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 4.13e-01 96.5% 76.7%
4366483 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 40.0 3.70e-01 87.7% 52.9%
3720991 221.1.1.44 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.56 48.0 4.47e-01 100.0% 97.3%
4974622 80.1.1.1 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn 0.56 44.0 3.63e-01 96.5% 46.7%
3390825 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.55 46.0 4.45e-01 96.5% 92.3%
3816395 1.1.11.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.55 48.0 3.57e-01 100.0% 49.0%
3838373 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.54 41.0 3.55e-01 84.2% 55.9%
4954284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.65e-01 87.7% 68.3%
4583631 80.1.1.1 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn 0.53 43.0 3.50e-01 98.2% 46.4%
3644377 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.53 40.0 3.32e-01 82.5% 49.5%
1178348 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.53 43.0 3.49e-01 100.0% 65.6%
3522602 389.6.1.5 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › Furin-like_2 0.53 33.0 2.68e-01 84.2% 35.2%
3717699 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 35.0 2.44e-01 91.2% 17.8%
3224717 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 42.0 3.48e-01 98.2% 59.2%
3623423 389.1.1.8 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Ephrin_rec_like 0.51 28.0 3.00e-01 89.5% 58.0%
4666947 80.1.1.0 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain 0.51 38.0 3.09e-01 80.7% 76.1%
4876508 389.6.1.5 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › Furin-like_2 0.50 33.0 2.71e-01 86.0% 38.8%