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NC_070967.1__YP_010671228.1__PQC17_gp079__00079

Bact-Vir

NC_070967.1__YP_010671228.1__PQC17_gp079__00079

Identity

Accession:
NC_070967 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskaviridae› Cuauhnahuacvirus› Rhizobium_phage_RHph_Y65

TaxID: 2509785

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yt5A02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.57 50.0 4.06e-01 98.5% 100.0%
4ehcA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.57 38.0 2.59e-01 70.8% 88.6%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.74e-01 100.0% 61.2%
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 36.0 2.62e-01 100.0% 29.4%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.51 32.0 3.34e-01 100.0% 67.2%
2rikA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.20e-01 100.0% 52.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3624909 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.65 49.0 4.05e-01 100.0% 45.2%
3618239 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.64 47.0 3.87e-01 100.0% 42.5%
3315163 3125.1.1.1 ↗ alpha arrays › Asl3597 › Asl3597 › Asl3597 › CRR7 0.60 50.0 4.89e-01 100.0% 100.0%
5080263 11.1.1.246 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.58 40.0 3.49e-01 100.0% 49.5%
5069617 11.1.1.246 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.57 39.0 3.46e-01 100.0% 51.1%
5045643 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.36e-01 100.0% 48.4%
3599192 10.15.1.0 ↗ beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like 0.55 42.0 3.32e-01 100.0% 41.6%
3227646 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 46.0 4.32e-01 100.0% 88.7%
3585524 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.52 38.0 3.22e-01 100.0% 46.4%
3261967 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 46.0 3.17e-01 100.0% 76.0%
3617113 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 47.0 4.37e-01 100.0% 90.0%
4981719 3501.1.1.0 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.52 35.0 3.51e-01 98.5% 69.2%
4380650 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 45.0 4.22e-01 100.0% 86.3%
5030570 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.50 43.0 3.27e-01 100.0% 77.0%
3414167 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 30.0 2.15e-01 90.8% 18.5%