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NC_070967.1__YP_010671273.1__PQC17_gp124__00124

Bact-Vir

NC_070967.1__YP_010671273.1__PQC17_gp124__00124

Identity

Accession:
NC_070967 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskaviridae› Cuauhnahuacvirus› Rhizobium_phage_RHph_Y65

TaxID: 2509785

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.75 40.0 3.60e-01 70.4% 38.3%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.73 44.0 4.41e-01 83.1% 59.2%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.69 43.0 3.28e-01 83.1% 27.3%
2zgyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 50.0 3.71e-01 78.9% 49.4%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 43.0 4.68e-01 81.7% 81.0%
5x1yA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 32.0 2.71e-01 73.2% 26.2%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 35.0 2.88e-01 81.7% 27.9%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.64 36.0 3.51e-01 81.7% 49.4%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 45.0 4.22e-01 87.3% 61.8%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 42.0 3.63e-01 70.4% 73.6%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.60 44.0 3.93e-01 80.3% 92.6%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 43.0 4.42e-01 97.2% 82.1%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 36.0 3.18e-01 95.8% 42.7%
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.59 36.0 3.81e-01 77.5% 68.3%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.59 42.0 3.58e-01 76.1% 53.0%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 45.0 3.72e-01 84.5% 66.7%
2jzjA01 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.58 42.0 3.74e-01 80.3% 85.6%
7d58G02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 3.69e-01 74.6% 67.3%
5x7qA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.57 50.0 3.57e-01 100.0% 86.3%
4yi7A02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.57 47.0 3.26e-01 94.4% 43.8%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.57 48.0 3.89e-01 94.4% 50.7%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.57 39.0 2.89e-01 94.4% 27.6%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 37.0 3.42e-01 76.1% 52.2%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 40.0 3.46e-01 74.6% 60.2%
7x3hA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 42.0 3.56e-01 78.9% 73.3%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 34.0 3.29e-01 83.1% 51.9%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.56 50.0 3.46e-01 100.0% 56.4%
2epgB00 3.90.1860.10 Alpha Beta › Alpha-Beta Complex › tRNA-splicing ligase RtcB › tRNA-splicing ligase RtcB 0.56 48.0 2.94e-01 94.4% 54.9%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 41.0 2.88e-01 78.9% 36.5%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 41.0 3.70e-01 78.9% 66.3%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.54 47.0 3.61e-01 100.0% 74.0%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.54 41.0 3.92e-01 84.5% 70.5%
3v0aB01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.54 48.0 2.95e-01 100.0% 65.5%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 3.30e-01 84.5% 95.9%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 3.51e-01 94.4% 93.2%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.00e-01 87.3% 29.0%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 41.0 3.79e-01 83.1% 64.8%
8b6jb01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 42.0 3.02e-01 87.3% 48.3%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 43.0 3.33e-01 100.0% 57.8%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 41.0 3.66e-01 85.9% 67.0%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 38.0 3.91e-01 88.7% 82.6%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 2.73e-01 94.4% 87.0%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.51 40.0 3.22e-01 84.5% 56.1%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.51 38.0 3.71e-01 94.4% 72.7%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 41.0 3.43e-01 98.6% 86.7%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 41.0 2.92e-01 93.0% 85.7%
2g8yA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.50 37.0 2.62e-01 77.5% 48.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4129953 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.72 44.0 4.66e-01 84.5% 69.2%
4492087 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.70 44.0 4.58e-01 84.5% 69.2%
4423403 330.1.1.14 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.70 54.0 4.30e-01 83.1% 64.1%
3288144 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.70 43.0 3.87e-01 87.3% 46.3%
3930399 4075.1.1.0 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain 0.70 46.0 4.08e-01 83.1% 48.5%
4595815 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.69 43.0 4.55e-01 85.9% 70.8%
3999192 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 44.0 4.23e-01 87.3% 57.5%
3934453 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.68 47.0 3.99e-01 78.9% 44.3%
4323683 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.68 49.0 4.13e-01 94.4% 48.2%
3501513 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.67 35.0 3.18e-01 74.6% 35.4%
5083957 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 42.0 3.95e-01 87.3% 51.8%
3671924 4325.1.1.12 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › AP2 0.67 37.0 4.53e-01 76.1% 94.9%
4948723 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.67 42.0 4.91e-01 83.1% 93.8%
4099964 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.67 42.0 4.38e-01 84.5% 69.2%
5078248 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.67 45.0 4.60e-01 93.0% 71.4%
3470076 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.65 50.0 4.04e-01 84.5% 87.1%
3506941 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.65 39.0 3.41e-01 77.5% 37.7%
3954816 101.1.2.584 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA 0.64 49.0 4.49e-01 83.1% 92.6%
4592291 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 43.0 3.54e-01 70.4% 94.6%
3244285 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.62 46.0 4.55e-01 78.9% 97.3%
3405112 220.1.1.237 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TMEM70 0.61 44.0 4.12e-01 83.1% 61.1%
3989853 77.1.1.13 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR 0.60 54.0 3.50e-01 98.6% 54.6%
1276875 210.2.1.2 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › SpoIIE 0.60 45.0 3.19e-01 81.7% 38.8%
1883345 1099.1.1.1 ↗ a+b two layers › RNase inhibitor Dip › RNase inhibitor Dip › RNase inhibitor Dip › Dip 0.60 53.0 3.63e-01 100.0% 56.0%
3635675 2008.1.1.144 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27653 0.59 41.0 3.00e-01 73.2% 28.3%
3789341 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 48.0 3.06e-01 88.7% 61.2%
3877934 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.59 37.0 2.41e-01 87.3% 14.4%
3509521 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 52.0 4.06e-01 98.6% 98.0%
5034902 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.58 32.0 2.55e-01 78.9% 25.5%
3597823 330.16.1.3 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › CEP19 0.57 42.0 4.25e-01 77.5% 78.6%
4069377 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 46.0 4.19e-01 87.3% 93.7%
3415471 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.57 45.0 3.95e-01 88.7% 88.2%
4980468 2484.1.1.338 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › baeRF_family10 0.57 46.0 3.79e-01 88.7% 98.5%
5074582 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.06e-01 81.7% 80.0%
1385077 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.56 45.0 3.46e-01 88.7% 39.3%
3838036 4071.1.1.1 ↗ beta barrels › BH3618-like › BH3618-like › BH3618-like › FliW 0.56 42.0 3.44e-01 78.9% 70.8%
3474138 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.56 47.0 3.63e-01 93.0% 89.7%
3324455 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 42.0 2.63e-01 81.7% 23.7%
5035060 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.54 45.0 3.87e-01 94.4% 88.3%
3936442 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.49e-01 76.1% 63.0%
3662203 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.54 36.0 3.45e-01 70.4% 67.1%
3699300 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 41.0 2.47e-01 81.7% 39.4%
3281177 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.53 43.0 3.28e-01 94.4% 71.9%
3409045 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 46.0 2.85e-01 100.0% 18.1%
3968900 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 40.0 3.33e-01 87.3% 48.3%
3607454 220.1.1.306 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_22 0.52 40.0 3.58e-01 83.1% 62.0%
3241726 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 45.0 2.90e-01 100.0% 88.7%
3206218 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.51 38.0 2.44e-01 77.5% 27.8%
3409882 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.51 31.0 3.43e-01 70.4% 75.9%
3643787 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.51 38.0 2.54e-01 85.9% 38.9%
3625596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.38e-01 90.1% 63.7%
3177990 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.51 44.0 3.05e-01 98.6% 56.1%
4398495 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.51 38.0 2.20e-01 81.7% 9.5%
4768829 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.50 44.0 2.84e-01 97.2% 32.9%