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NC_070967.1__YP_010671280.1__PQC17_gp131__00131

Bact-Vir

NC_070967.1__YP_010671280.1__PQC17_gp131__00131

Identity

Accession:
NC_070967 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskaviridae› Cuauhnahuacvirus› Rhizobium_phage_RHph_Y65

TaxID: 2509785

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-81
PDB
Domain cluster: rep: ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00010__D6-79
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.60 45.0 4.11e-01 80.3% 87.0%
1d0nA06 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 45.0 3.91e-01 100.0% 52.0%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.58 43.0 4.22e-01 80.3% 94.0%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.57 34.0 3.41e-01 97.4% 57.1%
2vugA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.56 45.0 4.06e-01 86.8% 98.0%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 42.0 3.59e-01 86.8% 74.1%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 45.0 3.80e-01 96.1% 58.2%
1cttA02 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 43.0 3.80e-01 86.8% 70.4%
5u3fA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.55 46.0 3.59e-01 100.0% 56.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 42.0 3.32e-01 85.5% 92.2%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 44.0 3.79e-01 90.8% 64.8%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 41.0 3.86e-01 85.5% 91.5%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 39.0 3.82e-01 97.4% 73.3%
2kp5A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.52 41.0 3.95e-01 89.5% 74.7%
6ljcC01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 39.0 3.52e-01 96.1% 57.9%
3hzbC00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.52 40.0 3.93e-01 89.5% 78.4%
1npsA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.51 40.0 3.88e-01 89.5% 78.4%
3snyA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.51 40.0 3.88e-01 89.5% 79.3%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.51 38.0 3.49e-01 84.2% 67.0%
2jx5A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.50 35.0 3.68e-01 85.5% 81.2%
2nn6B01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.50 40.0 3.03e-01 93.4% 95.0%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 38.0 2.65e-01 86.8% 89.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4018051 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.62 49.0 4.13e-01 89.5% 65.7%
3688782 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.61 45.0 2.93e-01 81.6% 47.3%
3910257 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 4.17e-01 81.6% 73.3%
5081134 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.59 41.0 4.44e-01 80.3% 93.3%
3415780 12.5.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.58 46.0 3.46e-01 86.8% 81.1%
3390562 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 39.0 4.04e-01 90.8% 77.1%
4151822 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.56 40.0 4.10e-01 100.0% 78.7%
3590261 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.56 42.0 4.35e-01 81.6% 91.2%
3713915 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 32.0 3.67e-01 86.8% 84.0%
4946842 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 39.0 3.00e-01 77.6% 34.7%
4931929 821.1.1.14 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.54 40.0 3.84e-01 100.0% 67.8%
5060332 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.53 39.0 3.37e-01 80.3% 70.8%
4096826 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.53 40.0 3.62e-01 82.9% 74.5%
4995409 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.53 45.0 3.14e-01 93.4% 50.4%
None — 0.51 44.0 2.86e-01 98.7% 31.9%
175113 2.1.1.28 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.50 37.0 3.09e-01 80.3% 68.5%
4944314 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 36.0 3.17e-01 77.6% 52.0%
3963007 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.50 37.0 2.38e-01 80.3% 35.7%