←Back to structures
NC_070967.1__YP_010671331.1__PQC17_gp182__00182
Bact-VirNC_070967.1__YP_010671331.1__PQC17_gp182__00182
Identity
- Accession:
- NC_070967 ↗
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Kleczkowskaviridae›
Cuauhnahuacvirus›
Rhizobium_phage_RHph_Y65
TaxID: 2509785
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-58
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3x1oA00 | 1.20.120.1790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 41.0 | 3.06e-01 | 73.2% | 30.2% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 40.0 | 3.34e-01 | 75.0% | 71.4% |
| 1nktA02 | 3.90.1440.10 | Alpha Beta › Alpha-Beta Complex › Pre-protein croslinking domain of SecA › SecA, preprotein cross-linking domain | 0.56 | 44.0 | 3.50e-01 | 89.3% | 90.2% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 39.0 | 3.26e-01 | 75.0% | 72.2% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 37.0 | 3.15e-01 | 71.4% | 47.5% |
| 4j4hA01 | 3.40.50.12150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 38.0 | 2.97e-01 | 73.2% | 76.3% |
| 3slzA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.54 | 36.0 | 2.98e-01 | 71.4% | 91.2% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 3.44e-01 | 73.2% | 56.9% |
| 2nyfA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.53 | 43.0 | 2.80e-01 | 100.0% | 96.9% |
| 1ny8A00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.52 | 31.0 | 2.66e-01 | 78.6% | 32.0% |
| 1mo9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 36.0 | 2.68e-01 | 73.2% | 67.3% |
| 1fp2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.62e-01 | 100.0% | 68.8% |
| 1lc5A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 41.0 | 3.27e-01 | 94.6% | 62.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3173687 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.62 | 47.0 | 4.14e-01 | 85.7% | 64.4% |
| 5081031 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.61 | 49.0 | 3.15e-01 | 96.4% | 17.6% |
| 3483446 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 40.0 | 3.43e-01 | 71.4% | 50.5% |
| 5020569 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.56 | 38.0 | 3.20e-01 | 73.2% | 59.0% |
| 3414098 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.44e-01 | 76.8% | 54.1% |
| 5012154 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.54 | 36.0 | 3.30e-01 | 71.4% | 56.4% |
| 3227763 | 2003.6.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase | 0.53 | 40.0 | 2.54e-01 | 87.5% | 15.1% |
| 3360171 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.52 | 41.0 | 3.22e-01 | 92.9% | 71.0% |
| 3463553 | 3860.1.1.56 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › XH | 0.52 | 40.0 | 3.48e-01 | 92.9% | 63.1% |
| 2088607 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.52 | 38.0 | 3.30e-01 | 80.4% | 97.9% |
| 4950716 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.52 | 35.0 | 2.97e-01 | 71.4% | 56.2% |
| 3664992 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.51 | 40.0 | 2.76e-01 | 85.7% | 26.5% |
| 3490937 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 40.0 | 2.79e-01 | 85.7% | 84.2% |