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NC_070967.1__YP_010671334.1__PQC17_gp185__00185

Bact-Vir

NC_070967.1__YP_010671334.1__PQC17_gp185__00185

Identity

Accession:
NC_070967 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskaviridae› Cuauhnahuacvirus› Rhizobium_phage_RHph_Y65

TaxID: 2509785

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-79
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00188__D1-70
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.80 72.0 6.84e-01 100.0% 91.8%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.77 68.0 5.88e-01 100.0% 83.3%
3onqA01 1.20.5.5100 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.77 43.0 5.37e-01 83.6% 95.2%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.72 63.0 5.55e-01 100.0% 84.5%
2j4bB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.71 49.0 3.95e-01 71.2% 47.4%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 48.0 4.84e-01 75.3% 94.6%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 54.0 3.52e-01 87.7% 93.2%
1gpjA01 3.30.460.30 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain 0.67 56.0 4.45e-01 91.8% 95.2%
2nx4C00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 50.0 3.73e-01 80.8% 44.9%
6t0bf00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.65 46.0 4.18e-01 75.3% 61.8%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 44.0 3.97e-01 71.2% 100.0%
3ddlA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.64 54.0 3.84e-01 100.0% 44.4%
3m6jA01 1.20.1260.40 Mainly Alpha › Up-down Bundle › Ferritin › 0.63 56.0 4.84e-01 100.0% 81.2%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 49.0 4.03e-01 100.0% 46.6%
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.61 45.0 4.04e-01 79.5% 83.7%
2kbwA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.60 44.0 3.53e-01 79.5% 52.3%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 40.0 3.38e-01 80.8% 40.7%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.59 44.0 3.52e-01 79.5% 74.7%
2hsnA02 1.20.1050.110 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 43.0 3.88e-01 80.8% 74.8%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 40.0 3.72e-01 72.6% 80.0%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 50.0 4.52e-01 94.5% 72.9%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 3.70e-01 80.8% 88.4%
1ohuA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.56 43.0 3.39e-01 84.9% 67.9%
2olpA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 47.0 3.79e-01 97.3% 95.4%
3wctD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 45.0 3.64e-01 91.8% 98.0%
16vpA00 1.10.1290.10 Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) 0.55 42.0 2.76e-01 82.2% 29.3%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 44.0 3.74e-01 97.3% 85.1%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.53 37.0 3.78e-01 74.0% 78.9%
1lxlA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.53 41.0 2.98e-01 84.9% 72.4%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 44.0 3.58e-01 91.8% 92.1%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 36.0 3.42e-01 74.0% 69.4%
1yisA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 40.0 3.63e-01 84.9% 71.8%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 43.0 4.00e-01 98.6% 91.8%
1wy9A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 35.0 3.10e-01 72.6% 86.5%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 44.0 3.52e-01 97.3% 90.6%
3cerA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.50 42.0 3.17e-01 100.0% 76.0%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.94e-01 93.2% 92.9%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3737705 605.4.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 0.82 58.0 5.15e-01 72.6% 86.0%
3333370 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.79 64.0 4.45e-01 97.3% 27.8%
3458100 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.77 50.0 3.22e-01 71.2% 15.1%
3289277 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.77 62.0 3.78e-01 100.0% 13.8%
3505422 633.21.1.27 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › PF31009 0.77 69.0 5.22e-01 100.0% 70.6%
3365142 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.74 51.0 3.52e-01 71.2% 34.8%
3270160 603.1.1.3 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.73 51.0 4.61e-01 74.0% 79.0%
3986322 4270.1.1.0 ↗ alpha bundles › N-terminal domain of Hypothetical protein MPN330 › N-terminal domain of Hypothetical protein MPN330 › N-terminal domain of Hypothetical protein MPN330 0.72 64.0 6.21e-01 100.0% 100.0%
4043494 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.70 49.0 3.54e-01 72.6% 73.7%
3925268 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 49.0 4.44e-01 79.5% 79.0%
3319356 650.1.1.5 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › CPP1-like 0.65 45.0 4.66e-01 97.3% 80.0%
3516023 109.4.1.150 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core 0.65 51.0 2.87e-01 84.9% 13.3%
5059586 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.65 55.0 5.46e-01 100.0% 96.2%
3235777 109.4.1.1568 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_8 0.64 56.0 3.91e-01 98.6% 78.8%
3888873 109.4.1.102 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › WAPL 0.63 51.0 3.33e-01 87.7% 31.2%
3875643 109.4.1.150 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core 0.63 49.0 2.77e-01 84.9% 13.5%
3743523 109.4.1.111 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUL 0.62 51.0 3.66e-01 97.3% 47.8%
3056924 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.61 53.0 3.72e-01 100.0% 30.0%
3632076 109.4.1.150 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core 0.61 49.0 2.78e-01 89.0% 13.9%
3621979 3198.1.1.1 ↗ alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.60 52.0 4.50e-01 100.0% 61.7%
3670047 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.60 42.0 4.10e-01 72.6% 96.2%
3605904 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 3.30e-01 97.3% 50.0%
4004433 109.4.1.109 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.59 50.0 4.01e-01 98.6% 65.2%
3782445 109.4.1.156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UNC45-central 0.58 48.0 2.80e-01 97.3% 14.7%
3938072 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.57 46.0 4.58e-01 98.6% 86.3%
4578321 3684.1.1.1 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF615 0.57 40.0 3.93e-01 74.0% 75.0%
3965811 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.56 42.0 3.68e-01 79.5% 95.4%
3629059 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.56 44.0 4.30e-01 95.9% 78.8%
4623297 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.56 47.0 3.89e-01 94.5% 65.9%
5000894 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.55 48.0 3.06e-01 100.0% 35.9%
3519106 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 3.47e-01 94.5% 55.8%
4331806 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.52 42.0 3.39e-01 87.7% 59.3%
3574000 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.51 45.0 3.53e-01 100.0% 67.5%
3743679 101.1.1.148 ↗ alpha arrays › HTH › HTH › Three-helical HTH › EPL1 0.51 43.0 3.92e-01 100.0% 91.4%
4433400 171.1.1.4 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.51 38.0 2.98e-01 80.8% 82.9%