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NC_070967.1__YP_010671408.1__PQC17_gp259__00259
Bact-VirNC_070967.1__YP_010671408.1__PQC17_gp259__00259
Identity
- Accession:
- NC_070967 ↗
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Kleczkowskaviridae›
Cuauhnahuacvirus›
Rhizobium_phage_RHph_Y65
TaxID: 2509785
Cluster
View cluster (115 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-154_200-225
Domain cluster:
rep: MN988559.1__QIG77230.1__EVB32_242__00242__D4-155_203-226
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01370.28 best | Epimerase | 50.2 | 3.40e-13 | 84.8% | 71.7% |
D2
high
residues 162-199_229-298
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n7hB01 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.72 | 58.0 | 5.96e-01 | 94.4% | 91.1% |
| 4lw8A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.72 | 54.0 | 5.94e-01 | 90.7% | 100.0% |
| 1bsvA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.71 | 55.0 | 5.83e-01 | 95.4% | 95.7% |
| 6dntA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.70 | 63.0 | 6.31e-01 | 98.1% | 99.1% |
| 6kv9A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.70 | 61.0 | 6.20e-01 | 96.3% | 98.1% |
| 6bwlA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.70 | 62.0 | 6.31e-01 | 100.0% | 99.1% |
| 1ek6A01 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.70 | 63.0 | 6.00e-01 | 100.0% | 93.7% |
| 6wjaA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.70 | 59.0 | 6.08e-01 | 94.4% | 99.0% |
| 3rucA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.67 | 55.0 | 5.66e-01 | 96.3% | 93.1% |
| 4wpgA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.62 | 43.0 | 4.90e-01 | 83.3% | 98.7% |
| 7yosA01 | 3.90.1640.30 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › | 0.61 | 44.0 | 3.63e-01 | 75.0% | 91.6% |
| 5x4kA01 | 3.90.1640.30 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › | 0.61 | 46.0 | 3.83e-01 | 79.6% | 94.7% |
| 3i6iA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.60 | 49.0 | 4.84e-01 | 88.9% | 94.0% |
| 2i3dB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 43.0 | 3.43e-01 | 80.6% | 90.4% |
| 2v4uA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.53 | 39.0 | 3.02e-01 | 77.8% | 96.3% |
| 2zxrA02 | 3.90.1640.30 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › | 0.53 | 43.0 | 3.45e-01 | 88.0% | 48.4% |
| 3r74B02 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.53 | 40.0 | 3.32e-01 | 80.6% | 100.0% |
| 5z87B02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.52 | 44.0 | 3.46e-01 | 93.5% | 84.4% |
| 4necC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 40.0 | 3.20e-01 | 81.5% | 80.4% |
| 2i0fA00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.52 | 40.0 | 3.62e-01 | 81.5% | 98.0% |
| 1jeyB01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.52 | 37.0 | 2.97e-01 | 75.0% | 100.0% |
| 1edzA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.52 | 40.0 | 3.81e-01 | 83.3% | 89.3% |
| 3k32B00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 42.0 | 3.48e-01 | 89.8% | 96.4% |
| 3jvdB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 37.0 | 3.62e-01 | 76.9% | 92.6% |
| 2vk2A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 37.0 | 3.53e-01 | 77.8% | 93.9% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 3.02e-01 | 84.3% | 66.0% |
| 4yapA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 35.0 | 3.40e-01 | 73.1% | 63.5% |
| 2qpqA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 40.0 | 3.84e-01 | 86.1% | 90.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3586704 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.71 | 64.0 | 4.41e-01 | 99.1% | 78.8% |
| 2754919 | 2003.1.1.72 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd | 0.70 | 59.0 | 4.29e-01 | 91.7% | 43.7% |
| 4621075 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.67 | 57.0 | 4.14e-01 | 94.4% | 96.1% |
| 5068300 | 2003.1.1.72 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd | 0.66 | 59.0 | 4.12e-01 | 99.1% | 90.6% |
| 3282283 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.65 | 56.0 | 4.08e-01 | 97.2% | 95.2% |
| 2712717 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.61 | 44.0 | 3.65e-01 | 75.0% | 91.6% |
| 4016128 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.59 | 52.0 | 4.00e-01 | 98.1% | 65.9% |
| 5003534 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.59 | 43.0 | 3.29e-01 | 75.9% | 68.4% |
| 4980521 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.58 | 43.0 | 3.41e-01 | 78.7% | 76.2% |
| 4854029 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.56 | 44.0 | 3.58e-01 | 83.3% | 90.2% |
| 5059458 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.56 | 42.0 | 3.24e-01 | 79.6% | 71.0% |
| 3406245 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.55 | 40.0 | 3.26e-01 | 77.8% | 100.0% |
| 5004101 | 2005.1.1.16 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Diphthami_syn_2 | 0.54 | 42.0 | 3.34e-01 | 86.1% | 80.9% |
| 4098108 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.53 | 43.0 | 3.44e-01 | 88.0% | 77.8% |
| 5050146 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.53 | 41.0 | 3.15e-01 | 83.3% | 74.9% |
| None | — | 0.53 | 43.0 | 3.46e-01 | 89.8% | 78.6% | |
| None | — | 0.52 | 42.0 | 3.33e-01 | 87.0% | 77.4% | |
| 3661397 | 2485.1.1.40 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_3 | 0.52 | 38.0 | 3.53e-01 | 76.9% | 66.4% |
| 4991573 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.52 | 42.0 | 3.37e-01 | 88.0% | 76.4% |
| 4930592 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.52 | 42.0 | 3.33e-01 | 87.0% | 77.7% |
| 5057459 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.52 | 40.0 | 3.14e-01 | 83.3% | 71.7% |
| 4443198 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.52 | 42.0 | 3.33e-01 | 89.8% | 76.9% |
| 3450433 | 2007.6.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 | 0.52 | 42.0 | 3.73e-01 | 89.8% | 85.6% |
| 3671803 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 29.0 | 3.67e-01 | 75.9% | 93.8% |
| 3585181 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.51 | 38.0 | 2.94e-01 | 80.6% | 54.0% |
| 3791475 | 2486.1.1.2 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease | 0.51 | 38.0 | 3.42e-01 | 80.6% | 72.5% |