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NC_070967.1__YP_010671432.1__PQC17_gp358__00283

Bact-Vir

NC_070967.1__YP_010671432.1__PQC17_gp358__00283

Identity

Accession:
NC_070967 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskaviridae› Cuauhnahuacvirus› Rhizobium_phage_RHph_Y65

TaxID: 2509785

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-93_231-248
PDB
Domain cluster: rep: NC_070764.1__YP_010649169.1__PP304_gp198__00125__D2-91_228-242
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25283.2 best DUF7873 64.0 2.50e-17 97.2% 36.5%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.73 60.0 4.41e-01 88.9% 67.8%
6vq6H01 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 57.0 4.61e-01 83.3% 89.7%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 42.0 4.38e-01 85.2% 63.3%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 40.0 4.68e-01 83.3% 81.9%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 53.0 4.80e-01 82.4% 98.0%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.69 53.0 5.71e-01 81.5% 96.8%
5y06A01 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 54.0 4.21e-01 83.3% 48.9%
1ykeD00 6.10.280.10 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator complex, subunit Med21 0.68 45.0 4.46e-01 82.4% 64.6%
3nkzA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.67 47.0 4.97e-01 100.0% 81.4%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 48.0 4.89e-01 76.9% 100.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 52.0 5.19e-01 84.3% 98.2%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 51.0 5.22e-01 84.3% 98.1%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.63 49.0 4.82e-01 80.6% 79.8%
6bl6B01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.63 52.0 3.73e-01 89.8% 38.0%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 48.0 4.55e-01 83.3% 99.2%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.61 47.0 4.86e-01 83.3% 87.1%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.61 31.0 3.34e-01 83.3% 57.1%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.60 48.0 4.83e-01 84.3% 86.9%
3kdqA00 6.10.320.10 Special › Helix non-globular › Ferritin › 0.57 45.0 4.05e-01 86.1% 99.3%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 45.0 4.09e-01 83.3% 92.2%
7d3uC01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 43.0 4.32e-01 99.1% 82.2%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.55 43.0 4.61e-01 98.1% 100.0%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 31.0 2.51e-01 89.8% 28.2%
3ooxA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.51 45.0 3.28e-01 97.2% 51.8%
1kqfC00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.50 42.0 3.39e-01 91.7% 48.6%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3936005 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.71 42.0 4.30e-01 96.3% 60.0%
5041857 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 53.0 4.86e-01 79.6% 100.0%
3692753 5086.1.1.12 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Uds1 0.69 54.0 4.87e-01 83.3% 77.3%
3575976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 52.0 4.76e-01 81.5% 99.3%
4645961 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.67 55.0 4.60e-01 89.8% 73.2%
3691694 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 52.0 4.94e-01 83.3% 94.4%
3614763 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 51.0 4.95e-01 81.5% 85.0%
3522272 1075.1.2.20 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › DC_STAMP 0.65 50.0 4.58e-01 83.3% 99.3%
3985268 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.64 50.0 3.77e-01 82.4% 65.1%
3409778 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 48.0 4.55e-01 81.5% 92.3%
3988581 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 48.0 5.18e-01 83.3% 97.8%
3472642 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.62 50.0 3.41e-01 87.0% 41.5%
3457354 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 48.0 4.44e-01 84.3% 90.3%
4669204 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 2.88e-01 74.1% 19.3%
3519635 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 47.0 4.68e-01 81.5% 100.0%
4009415 3747.1.1.2 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C 0.60 47.0 4.56e-01 84.3% 97.5%
3538408 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 46.0 4.90e-01 83.3% 97.9%
3595979 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.59 45.0 4.76e-01 82.4% 90.5%
3728035 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.58 45.0 4.33e-01 90.7% 72.0%
3689581 101.1.2.517 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.58 43.0 2.70e-01 88.9% 15.7%
3931288 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.58 48.0 3.72e-01 97.2% 42.6%
3167160 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 2.64e-01 75.9% 29.6%
3971859 3747.1.1.2 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C 0.58 46.0 4.60e-01 85.2% 96.4%
4001659 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.57 42.0 3.60e-01 78.7% 97.1%
4145438 3747.1.1.3 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C 0.56 44.0 4.61e-01 84.3% 98.0%
3706461 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.55 49.0 4.95e-01 97.2% 99.1%
4950793 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.55 44.0 2.72e-01 88.9% 16.4%
4034493 304.8.1.48 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MNHE 0.55 35.0 3.51e-01 100.0% 62.7%
4611946 3281.1.1.4 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,NADH5_C 0.54 49.0 3.08e-01 100.0% 51.4%
4299747 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.54 49.0 3.13e-01 100.0% 55.6%
4199194 109.4.1.83 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.53 48.0 3.37e-01 100.0% 48.5%
4262617 5061.1.1.1 ↗ alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.53 44.0 3.19e-01 94.4% 63.1%
3385833 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 42.0 2.92e-01 95.4% 25.8%
5066190 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.52 24.0 3.03e-01 95.4% 74.1%
3561667 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 44.0 2.90e-01 95.4% 33.4%
D2 medium residues 96-132
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25283.2 best DUF7873 39.0 1.10e-09 100.0% 15.2%