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NC_070967.1__YP_010671454.1__PQC17_gp336__00305
Bact-VirNC_070967.1__YP_010671454.1__PQC17_gp336__00305
Identity
- Accession:
- NC_070967 ↗
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Kleczkowskaviridae›
Cuauhnahuacvirus›
Rhizobium_phage_RHph_Y65
TaxID: 2509785
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-76
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ss4A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.72 | 41.0 | 3.13e-01 | 70.1% | 24.8% |
| 3oxhA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.72 | 40.0 | 3.30e-01 | 74.6% | 31.6% |
| 2r6uA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.71 | 40.0 | 3.26e-01 | 70.1% | 30.3% |
| 2p25A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.70 | 41.0 | 3.39e-01 | 74.6% | 32.8% |
| 3oxhA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.70 | 41.0 | 3.22e-01 | 79.1% | 28.5% |
| 1lgyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.69 | 62.0 | 4.10e-01 | 100.0% | 31.3% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 48.0 | 4.00e-01 | 74.6% | 45.8% |
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.68 | 46.0 | 3.59e-01 | 71.6% | 79.5% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 47.0 | 4.00e-01 | 73.1% | 86.1% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 45.0 | 2.77e-01 | 70.1% | 72.0% |
| 3e5dA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.66 | 40.0 | 3.26e-01 | 73.1% | 32.0% |
| 1uswA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.66 | 59.0 | 3.95e-01 | 100.0% | 31.9% |
| 2w7vA00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.65 | 44.0 | 4.11e-01 | 70.1% | 76.8% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.64 | 44.0 | 4.18e-01 | 71.6% | 79.7% |
| 4uf7B00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.63 | 54.0 | 3.37e-01 | 98.5% | 53.4% |
| 4mtsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.63 | 41.0 | 3.31e-01 | 74.6% | 34.9% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.62 | 42.0 | 3.74e-01 | 70.1% | 95.7% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.62 | 54.0 | 4.91e-01 | 100.0% | 76.9% |
| 2shpB03 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.61 | 44.0 | 2.95e-01 | 77.6% | 38.5% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 43.0 | 3.46e-01 | 74.6% | 39.4% |
| 3grdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 42.0 | 3.48e-01 | 74.6% | 49.2% |
| 3uueA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 54.0 | 3.55e-01 | 100.0% | 31.9% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 48.0 | 3.09e-01 | 91.0% | 24.5% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 44.0 | 3.79e-01 | 100.0% | 48.3% |
| 1ykdB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.58 | 47.0 | 3.52e-01 | 94.0% | 82.4% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.57 | 46.0 | 3.80e-01 | 94.0% | 83.8% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.57 | 43.0 | 3.35e-01 | 82.1% | 85.0% |
| 1f0cA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.57 | 47.0 | 3.99e-01 | 95.5% | 76.3% |
| 2arhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 45.0 | 3.55e-01 | 100.0% | 39.9% |
| 1jc4A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 48.0 | 3.82e-01 | 100.0% | 82.1% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 39.0 | 3.86e-01 | 73.1% | 71.0% |
| 4ix3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 38.0 | 3.30e-01 | 74.6% | 46.0% |
| 3v98A03 | 3.10.450.60 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 43.0 | 3.69e-01 | 89.6% | 76.7% |
| 2fgeA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 45.0 | 3.19e-01 | 98.5% | 70.5% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 3.64e-01 | 70.1% | 69.3% |
| 6bu2A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 45.0 | 3.64e-01 | 100.0% | 76.7% |
| 6eotD01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.54 | 48.0 | 2.81e-01 | 98.5% | 31.4% |
| 5w3xD01 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.54 | 36.0 | 3.69e-01 | 71.6% | 72.3% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.54 | 40.0 | 2.90e-01 | 85.1% | 99.1% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 45.0 | 3.11e-01 | 95.5% | 87.5% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 45.0 | 4.07e-01 | 98.5% | 87.4% |
| 6w1kA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.52 | 44.0 | 2.94e-01 | 100.0% | 72.1% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.52 | 41.0 | 3.44e-01 | 91.0% | 76.8% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3507420 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 48.0 | 4.29e-01 | 74.6% | 47.4% |
| 3983195 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.71 | 41.0 | 4.80e-01 | 71.6% | 84.4% |
| 5060852 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.68 | 37.0 | 4.34e-01 | 70.1% | 77.8% |
| 3284847 | 243.1.1.80 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 | 0.66 | 46.0 | 3.95e-01 | 73.1% | 50.0% |
| 3685808 | 2003.1.2.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 | 0.66 | 44.0 | 2.61e-01 | 70.1% | 88.0% |
| 4319175 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.63 | 38.0 | 3.93e-01 | 73.1% | 61.5% |
| 3234660 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.63 | 46.0 | 3.13e-01 | 77.6% | 24.0% |
| 1830108 | 2484.8.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 | 0.63 | 44.0 | 2.90e-01 | 73.1% | 57.6% |
| 3228872 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.63 | 46.0 | 2.92e-01 | 77.6% | 18.8% |
| 3744503 | 2484.8.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 | 0.63 | 44.0 | 2.94e-01 | 74.6% | 63.2% |
| 5030555 | 3433.1.1.0 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain | 0.63 | 37.0 | 4.44e-01 | 86.6% | 97.5% |
| 3511883 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.62 | 44.0 | 3.81e-01 | 74.6% | 76.0% |
| 3654480 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.61 | 54.0 | 3.45e-01 | 98.5% | 94.7% |
| 3326501 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.61 | 53.0 | 3.45e-01 | 100.0% | 94.6% |
| 3237464 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.60 | 44.0 | 2.82e-01 | 77.6% | 19.4% |
| 3280521 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.60 | 41.0 | 2.84e-01 | 71.6% | 73.2% |
| 3218924 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.60 | 43.0 | 2.76e-01 | 77.6% | 18.3% |
| 5058653 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 40.0 | 3.29e-01 | 70.1% | 45.0% |
| 3607433 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 52.0 | 3.14e-01 | 100.0% | 22.8% |
| 3998600 | 5.1.2.46 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_IFT140_1st | 0.59 | 53.0 | 4.11e-01 | 100.0% | 68.8% |
| 4126991 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 41.0 | 3.84e-01 | 76.1% | 65.6% |
| None | — | 0.58 | 51.0 | 3.15e-01 | 100.0% | 27.8% | |
| 3829563 | 897.1.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 | 0.58 | 47.0 | 3.67e-01 | 95.5% | 61.8% |
| 3707461 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.58 | 40.0 | 3.22e-01 | 71.6% | 74.8% |
| 3404944 | 5.1.4.235 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st | 0.58 | 52.0 | 3.15e-01 | 100.0% | 22.3% |
| 4260316 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.58 | 40.0 | 3.82e-01 | 73.1% | 62.5% |
| 5023640 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.58 | 47.0 | 4.56e-01 | 95.5% | 82.3% |
| 3546312 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.57 | 41.0 | 3.51e-01 | 76.1% | 100.0% |
| 3831822 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 51.0 | 2.84e-01 | 100.0% | 15.0% |
| 3362660 | 2003.1.2.150 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, GGR_cat | 0.57 | 49.0 | 3.05e-01 | 100.0% | 47.9% |
| 3950065 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.56 | 48.0 | 3.82e-01 | 98.5% | 80.0% |
| 4978521 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.56 | 47.0 | 3.90e-01 | 100.0% | 51.7% |
| 3502940 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 39.0 | 3.43e-01 | 73.1% | 49.0% |
| 3989850 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 38.0 | 3.35e-01 | 70.1% | 98.0% |
| 3283256 | 2003.1.2.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase | 0.56 | 48.0 | 2.90e-01 | 100.0% | 44.8% |
| 5070941 | 2004.1.1.790 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_P-loop | 0.55 | 38.0 | 2.73e-01 | 71.6% | 97.6% |
| 2803903 | 2007.2.3.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK | 0.55 | 39.0 | 2.64e-01 | 77.6% | 21.2% |
| 3429270 | 5.1.5.93 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N | 0.54 | 45.0 | 2.73e-01 | 95.5% | 14.2% |
| 1680313 | 213.1.1.17 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 | 0.54 | 43.0 | 3.21e-01 | 100.0% | 32.0% |
| 3599635 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 39.0 | 2.35e-01 | 80.6% | 21.2% |
| 3227940 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.53 | 37.0 | 2.60e-01 | 74.6% | 50.6% |
| 3575385 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 42.0 | 3.82e-01 | 94.0% | 94.0% |
| 3629974 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.51 | 41.0 | 3.67e-01 | 92.5% | 92.0% |
| 4972587 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.51 | 41.0 | 3.19e-01 | 94.0% | 38.7% |
| 3567156 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.50 | 40.0 | 2.94e-01 | 97.0% | 59.1% |