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NC_070967.1__YP_010671483.1__PQC17_gp307__00334

Bact-Vir

NC_070967.1__YP_010671483.1__PQC17_gp307__00334

Identity

Accession:
NC_070967 ↗
Kingdom:
phage

Quality

51.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskaviridae› Cuauhnahuacvirus› Rhizobium_phage_RHph_Y65

TaxID: 2509785

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 127-230
PDB
Domain cluster: rep: PHAGE-A7--js4906-24-3_S18_scaffold_0_curated_closed_complete_start-adj_prodigal-single.1__X__X__00182__D525-622
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 45.0 3.82e-01 70.2% 100.0%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.65 44.0 4.70e-01 70.2% 100.0%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 44.0 3.97e-01 70.2% 64.4%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.64 45.0 3.66e-01 71.2% 76.8%
3juuA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 43.0 3.19e-01 73.1% 96.3%
4fkeA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.59 48.0 3.68e-01 86.5% 40.5%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 4.19e-01 85.6% 95.3%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 43.0 3.98e-01 82.7% 100.0%
4cu7A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 3.59e-01 87.5% 50.9%
5c5uB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 48.0 3.93e-01 98.1% 100.0%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 4.24e-01 84.6% 87.3%
1umhA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 3.47e-01 86.5% 69.0%
2rg4A01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 46.0 3.72e-01 98.1% 100.0%
4e8dA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 44.0 3.70e-01 99.0% 84.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281166 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.63 46.0 4.43e-01 86.5% 67.8%
3258281 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 45.0 4.48e-01 83.7% 73.6%
3466694 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.60 41.0 3.74e-01 70.2% 62.9%
3972567 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 45.0 4.77e-01 87.5% 97.8%
3188281 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 43.0 3.97e-01 89.4% 62.1%
5036963 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 38.0 3.73e-01 70.2% 77.4%
3396980 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 40.0 4.28e-01 87.5% 87.8%
3514189 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.55 43.0 4.14e-01 88.5% 72.5%
3909757 12.5.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.54 37.0 3.56e-01 72.1% 68.0%
3875233 11.1.1.859 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set, Ig_3 0.53 42.0 3.33e-01 87.5% 40.0%
3870401 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.51 39.0 3.91e-01 81.7% 90.5%