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NC_070967.1__YP_010671490.1__PQC17_gp300__00341

Bact-Vir

NC_070967.1__YP_010671490.1__PQC17_gp300__00341

Identity

Accession:
NC_070967 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskaviridae› Cuauhnahuacvirus› Rhizobium_phage_RHph_Y65

TaxID: 2509785

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-96
PDB
Domain cluster: rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00132__D29-77_93-127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04717.19 best Phage_base_V 45.7 9.20e-12 97.5% 96.0%
D2 high residues 103-172
PDB
Domain cluster: rep: LC554890.1__BCG50068.1__X__00050__D119-183
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 65.0 5.62e-01 100.0% 97.1%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.67 54.0 4.17e-01 100.0% 39.4%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.65 51.0 3.96e-01 100.0% 38.2%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.61 53.0 4.64e-01 100.0% 95.5%
2abqA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 49.0 3.21e-01 87.1% 88.2%
6nqiA01 3.30.420.230 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Prp8 RNase H domain, palm region 0.61 46.0 3.73e-01 81.4% 95.7%
2f02B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 51.0 3.29e-01 91.4% 87.6%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.61 53.0 4.84e-01 100.0% 73.9%
1x1iA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.61 55.0 4.58e-01 98.6% 94.1%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.60 54.0 4.53e-01 98.6% 93.0%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.60 53.0 5.04e-01 97.1% 82.9%
3dcdA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 50.0 3.37e-01 98.6% 83.9%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.59 40.0 3.73e-01 87.1% 55.7%
2ajrA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 46.0 3.15e-01 87.1% 56.6%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 48.0 3.57e-01 95.7% 35.6%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 4.09e-01 100.0% 82.7%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 45.0 3.14e-01 87.1% 93.5%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.57 49.0 3.90e-01 100.0% 75.3%
3qr8A02 6.20.150.10 Special › Other non-globular › Chondroitinase Ac; Chain A, domain 3 › 0.56 42.0 4.23e-01 100.0% 78.1%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.55 48.0 4.59e-01 98.6% 98.8%
1y4wA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 42.0 3.37e-01 88.6% 67.3%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 43.0 3.05e-01 88.6% 92.7%
3op2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 41.0 3.46e-01 84.3% 87.9%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.54 45.0 3.91e-01 94.3% 80.5%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.54 47.0 4.02e-01 98.6% 76.3%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 41.0 3.24e-01 90.0% 72.9%
3madA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 38.0 3.15e-01 77.1% 52.7%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 47.0 4.11e-01 100.0% 75.5%
1lshA04 2.20.80.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 0.53 45.0 3.17e-01 100.0% 95.6%
2zauA01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.52 40.0 3.28e-01 81.4% 93.7%
1oypA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 43.0 3.15e-01 100.0% 74.8%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 42.0 2.89e-01 100.0% 44.9%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.50 43.0 3.49e-01 100.0% 55.5%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.50 40.0 2.83e-01 92.9% 32.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995814 2.7.1.1 ↗ beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.92 68.0 5.01e-01 100.0% 33.8%
3231343 77.1.1.10 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.68 58.0 4.66e-01 100.0% 49.2%
3077250 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.64 40.0 3.76e-01 87.1% 50.0%
3179796 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.64 56.0 3.50e-01 100.0% 43.2%
1147818 216.1.1.8 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Knl1_RWD_C 0.63 51.0 4.33e-01 90.0% 70.9%
1548151 331.1.1.9 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › RepD-like_N 0.62 44.0 4.03e-01 90.0% 55.8%
3245832 145.1.1.30 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › FBA_2 0.61 48.0 3.23e-01 90.0% 22.3%
3774338 292.2.1.6 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 0.58 49.0 4.24e-01 98.6% 60.0%
3822448 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.58 51.0 3.11e-01 100.0% 34.0%
3708545 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.57 47.0 4.53e-01 91.4% 100.0%
3194763 9.15.1.0 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 0.57 49.0 3.76e-01 95.7% 51.9%
3749834 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.56 36.0 3.93e-01 92.9% 83.6%
3742310 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.55 48.0 3.19e-01 100.0% 41.3%
4431947 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.55 44.0 2.92e-01 91.4% 33.1%
3688445 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.55 45.0 3.27e-01 88.6% 40.5%
3843785 292.2.1.10 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34-like_N 0.54 44.0 3.94e-01 88.6% 90.8%
3282173 2004.1.1.689 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21 0.54 43.0 2.77e-01 90.0% 36.3%
3496279 206.1.2.4 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.54 41.0 2.52e-01 84.3% 24.4%
3471154 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.68e-01 90.0% 75.0%
4852223 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.53 40.0 3.44e-01 88.6% 81.5%
3799100 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 43.0 2.79e-01 97.1% 32.0%
4596504 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.50 43.0 3.24e-01 98.6% 78.9%
3676414 206.1.2.2 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K 0.50 36.0 2.78e-01 77.1% 85.1%
5078972 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.50 44.0 4.12e-01 98.6% 83.5%
4957480 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.50 43.0 2.74e-01 97.1% 30.8%