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NC_070970.1__YP_010671680.1__PQC31_gp07__00007
Bact-VirNC_070970.1__YP_010671680.1__PQC31_gp07__00007
Identity
- Accession:
- NC_070970 ↗
- Kingdom:
- phage
Quality
59.4
mean pLDDT
Taxonomy
TaxID: 2592193
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-77
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.79 | 59.0 | 3.91e-01 | 78.0% | 23.4% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.78 | 58.0 | 4.23e-01 | 78.0% | 34.0% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.78 | 57.0 | 4.78e-01 | 78.0% | 50.5% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.76 | 55.0 | 4.07e-01 | 78.0% | 98.7% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.73 | 50.0 | 4.32e-01 | 78.0% | 46.7% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 51.0 | 4.95e-01 | 74.6% | 83.3% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 52.0 | 5.07e-01 | 79.7% | 81.5% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 51.0 | 4.90e-01 | 78.0% | 73.1% |
| 1lm3B00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.69 | 51.0 | 4.15e-01 | 78.0% | 53.8% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.68 | 50.0 | 4.31e-01 | 78.0% | 53.8% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 49.0 | 3.95e-01 | 78.0% | 47.0% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.63 | 43.0 | 3.90e-01 | 71.2% | 96.3% |
| 1x3aA00 | 1.10.3970.10 | Mainly Alpha › Orthogonal Bundle › BSD domain-like fold › BSD domain | 0.63 | 48.0 | 4.04e-01 | 81.4% | 85.0% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.63 | 50.0 | 3.94e-01 | 89.8% | 46.1% |
| 1kz7A01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.63 | 56.0 | 3.87e-01 | 98.3% | 93.3% |
| 1te2A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 46.0 | 4.29e-01 | 78.0% | 97.2% |
| 2hqcA01 | 1.20.1640.10 | Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain | 0.62 | 46.0 | 3.18e-01 | 79.7% | 25.7% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.62 | 46.0 | 4.34e-01 | 83.1% | 73.7% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.62 | 45.0 | 3.99e-01 | 79.7% | 93.3% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 49.0 | 4.56e-01 | 94.9% | 75.9% |
| 1hdlA00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.60 | 41.0 | 4.22e-01 | 89.8% | 76.4% |
| 3k3uA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 50.0 | 3.95e-01 | 98.3% | 82.5% |
| 3oftA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 50.0 | 3.09e-01 | 100.0% | 15.4% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 42.0 | 4.27e-01 | 79.7% | 84.5% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 51.0 | 4.29e-01 | 100.0% | 62.1% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 40.0 | 3.64e-01 | 76.3% | 98.8% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.56 | 42.0 | 3.36e-01 | 81.4% | 91.1% |
| 6f7bA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.56 | 42.0 | 2.69e-01 | 81.4% | 69.9% |
| 1grlB01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.55 | 47.0 | 3.19e-01 | 100.0% | 47.5% |
| 5dcaA11 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 49.0 | 4.06e-01 | 100.0% | 75.2% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.55 | 45.0 | 3.42e-01 | 93.2% | 55.2% |
| 5pg1A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 45.0 | 3.67e-01 | 93.2% | 50.4% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 46.0 | 4.55e-01 | 93.2% | 91.8% |
| 2v4jA01 | 6.10.140.1420 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 37.0 | 3.73e-01 | 81.4% | 79.4% |
| 2lt3A01 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.52 | 45.0 | 3.82e-01 | 100.0% | 66.0% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.51 | 38.0 | 3.46e-01 | 78.0% | 83.5% |
| 4bwrA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 41.0 | 2.46e-01 | 91.5% | 18.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979245 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.82 | 62.0 | 4.60e-01 | 78.0% | 37.7% |
| 3355429 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.82 | 61.0 | 5.90e-01 | 78.0% | 75.4% |
| 5047797 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.79 | 61.0 | 5.52e-01 | 79.7% | 68.0% |
| 3320941 | 109.4.1.1762 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30995 | 0.79 | 57.0 | 4.17e-01 | 76.3% | 31.7% |
| 5055477 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.79 | 63.0 | 5.62e-01 | 84.7% | 95.0% |
| 3197460 | 6132.1.1.7 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › efThoc1 | 0.78 | 57.0 | 5.87e-01 | 76.3% | 83.6% |
| 3956906 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.78 | 59.0 | 5.41e-01 | 79.7% | 66.7% |
| 4959275 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.77 | 59.0 | 4.02e-01 | 79.7% | 27.0% |
| 5046670 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.77 | 58.0 | 3.94e-01 | 79.7% | 25.6% |
| 4944568 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.75 | 56.0 | 5.46e-01 | 79.7% | 76.9% |
| 4600185 | 3602.1.1.15 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF444 | 0.75 | 52.0 | 4.79e-01 | 78.0% | 57.3% |
| 3258587 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.74 | 54.0 | 3.81e-01 | 78.0% | 58.9% |
| 4149526 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.74 | 53.0 | 5.72e-01 | 78.0% | 90.0% |
| 4418131 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.72 | 50.0 | 5.37e-01 | 74.6% | 87.8% |
| 4532371 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.71 | 51.0 | 5.43e-01 | 76.3% | 92.0% |
| 4403724 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.71 | 48.0 | 5.31e-01 | 72.9% | 93.3% |
| 4248599 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.70 | 51.0 | 5.49e-01 | 78.0% | 95.8% |
| 3389963 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.68 | 49.0 | 4.72e-01 | 78.0% | 68.6% |
| 3879684 | 223.2.1.46 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M | 0.67 | 56.0 | 4.08e-01 | 93.2% | 62.4% |
| 3270116 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.66 | 48.0 | 4.12e-01 | 78.0% | 63.2% |
| 4945326 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.65 | 50.0 | 4.51e-01 | 83.1% | 67.5% |
| 5044958 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.65 | 51.0 | 4.59e-01 | 84.7% | 73.8% |
| 3487704 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 55.0 | 4.49e-01 | 98.3% | 91.3% |
| 3923519 | 2008.1.1.24 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDCD9 | 0.64 | 55.0 | 3.41e-01 | 100.0% | 48.8% |
| 5060252 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.63 | 46.0 | 4.18e-01 | 81.4% | 67.1% |
| 3780993 | 3443.1.1.5 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain › TTC3_9th | 0.62 | 43.0 | 4.31e-01 | 83.1% | 70.0% |
| 5020814 | 3290.1.1.0 ↗ | alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B | 0.61 | 44.0 | 3.84e-01 | 76.3% | 68.9% |
| 2772442 | 159.1.2.3 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › dATP-dGTP_PPHyd | 0.59 | 40.0 | 3.30e-01 | 96.6% | 41.4% |
| 1088880 | 101.1.1.87 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CarD_C | 0.59 | 42.0 | 3.53e-01 | 76.3% | 81.2% |
| 3704501 | 109.4.1.839 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT | 0.58 | 48.0 | 3.20e-01 | 100.0% | 41.1% |
| 4669178 | 109.4.1.2072 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29151 | 0.57 | 47.0 | 3.47e-01 | 93.2% | 66.5% |
| 3706374 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 48.0 | 3.57e-01 | 98.3% | 36.7% |
| 5054826 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.56 | 45.0 | 3.93e-01 | 89.8% | 62.2% |
| 3405750 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.56 | 47.0 | 3.78e-01 | 100.0% | 54.4% |
| 3215046 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 43.0 | 3.37e-01 | 96.6% | 77.0% |
D2
high
residues 112-199_211-220