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NC_070970.1__YP_010671706.1__PQC31_gp33__00033

Bact-Vir

NC_070970.1__YP_010671706.1__PQC31_gp33__00033

Identity

Accession:
NC_070970 ↗
Kingdom:
phage

Quality

55.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Iggyvirus› Pseudomonas_phage_Iggy

TaxID: 2592193

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 254-348
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.75 64.0 6.58e-01 100.0% 97.8%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.73 59.0 6.21e-01 91.6% 98.8%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.72 63.0 6.45e-01 96.8% 98.9%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.71 62.0 6.33e-01 98.9% 100.0%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.62 48.0 4.68e-01 100.0% 76.4%
4knuA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.60 44.0 3.70e-01 76.8% 71.7%
4f54A00 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 47.0 3.80e-01 86.3% 71.6%
3k7eB00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 41.0 3.23e-01 72.6% 90.0%
1wtjA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.56 45.0 3.65e-01 87.4% 84.3%
2g8yA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.56 45.0 3.52e-01 88.4% 97.7%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 47.0 4.40e-01 100.0% 73.8%
1q15A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 49.0 3.81e-01 95.8% 97.6%
1aozA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.56 43.0 3.42e-01 84.2% 95.1%
5zl1A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 41.0 3.01e-01 88.4% 87.3%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 40.0 3.71e-01 82.1% 86.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.75 62.0 6.51e-01 96.8% 97.7%
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.74 66.0 6.63e-01 98.9% 97.9%
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.72 63.0 6.43e-01 96.8% 97.8%
4451235 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.66 59.0 4.33e-01 100.0% 63.0%
3185812 2003.1.5.35 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.64 46.0 3.08e-01 74.7% 73.1%
146984 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.63 56.0 4.12e-01 100.0% 61.7%
4063416 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 45.0 4.02e-01 73.7% 72.3%
7233 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.62 49.0 4.77e-01 100.0% 76.6%
4475590 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.62 50.0 4.92e-01 100.0% 81.0%
4651440 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.61 50.0 4.84e-01 100.0% 78.2%
2156967 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.61 50.0 4.80e-01 100.0% 77.5%
4330222 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.60 49.0 4.54e-01 98.9% 70.8%
4493843 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.60 48.0 4.73e-01 100.0% 81.0%
3485798 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.12e-01 92.6% 92.7%
4092984 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.57 48.0 3.70e-01 100.0% 74.1%
3836258 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.54 42.0 4.11e-01 84.2% 97.1%
3651307 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 40.0 3.77e-01 82.1% 93.0%
3811574 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.51 40.0 3.99e-01 84.2% 94.0%
3344608 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.51 40.0 3.96e-01 85.3% 94.0%
D2 medium residues 1-62
PDB
D3 medium residues 104-145_161-194
PDB