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NC_070970.1__YP_010671718.1__PQC31_gp45__00045

Bact-Vir

NC_070970.1__YP_010671718.1__PQC31_gp45__00045

Identity

Accession:
NC_070970 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 3.90e-01 85.5% 57.4%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.65 55.0 5.45e-01 100.0% 97.0%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.64 54.0 3.77e-01 100.0% 40.3%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.10e-01 96.8% 71.1%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.61 51.0 4.20e-01 98.4% 56.8%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.37e-01 79.0% 73.6%
5optY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 35.0 2.89e-01 98.4% 28.5%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.10e-01 91.9% 84.0%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.36e-01 79.0% 67.9%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.40e-01 85.5% 55.3%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.63e-01 90.3% 72.7%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.45e-01 85.5% 75.4%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.84e-01 91.9% 88.7%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.32e-01 90.3% 50.6%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.77e-01 90.3% 89.3%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.50e-01 90.3% 78.8%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.48e-01 91.9% 62.4%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.83e-01 90.3% 83.7%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.21e-01 90.3% 78.0%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.40e-01 87.1% 62.5%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.66e-01 87.1% 91.3%
4jz6A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 38.0 2.65e-01 77.4% 62.1%
2e5vA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 2.94e-01 96.8% 47.3%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.58e-01 91.9% 82.5%
6z3tA01 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.54 45.0 2.84e-01 100.0% 19.7%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.42e-01 90.3% 81.8%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.44e-01 96.8% 72.9%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.48e-01 85.5% 78.1%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.33e-01 91.9% 73.0%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.32e-01 91.9% 80.1%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.47e-01 91.9% 81.7%
1l1qA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 35.0 2.64e-01 74.2% 41.4%
3wnzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 41.0 3.57e-01 90.3% 58.7%
3gudA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.34e-01 90.3% 85.7%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.45e-01 100.0% 86.6%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.16e-01 90.3% 59.9%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.26e-01 90.3% 66.7%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.20e-01 96.8% 65.4%
2gs8A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.50 39.0 3.01e-01 83.9% 90.0%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.50 31.0 2.85e-01 74.2% 42.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 41.0 3.42e-01 90.3% 71.6%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3499265 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.66 56.0 3.60e-01 100.0% 41.2%
3707421 5050.1.1.6 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.65 55.0 3.73e-01 100.0% 28.5%
3734132 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.64 54.0 3.48e-01 98.4% 43.8%
3588306 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.63 48.0 3.81e-01 85.5% 59.3%
3287587 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.61 47.0 3.79e-01 90.3% 67.1%
5006152 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 3.54e-01 87.1% 47.5%
5005002 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 45.0 3.63e-01 87.1% 57.9%
4889887 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.60 48.0 3.62e-01 87.1% 39.0%
5011599 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.59 44.0 3.92e-01 82.3% 82.1%
4138755 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 46.0 3.77e-01 91.9% 62.2%
4067342 5069.1.1.15 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.59 49.0 3.18e-01 100.0% 19.5%
2790593 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.59 45.0 3.49e-01 85.5% 62.6%
3283183 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 45.0 3.45e-01 85.5% 65.2%
3288926 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 48.0 3.80e-01 96.8% 69.7%
4944548 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.58 46.0 3.27e-01 91.9% 71.2%
4082847 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.58 45.0 3.62e-01 90.3% 67.9%
3280001 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.58 45.0 3.56e-01 91.9% 65.2%
5047364 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 44.0 3.84e-01 91.9% 85.5%
3967976 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.57 40.0 3.03e-01 75.8% 31.9%
4932062 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.57 39.0 3.46e-01 74.2% 76.0%
3943959 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.57 47.0 3.65e-01 96.8% 66.0%
4033346 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.57 43.0 3.86e-01 87.1% 89.5%
4588116 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.57 44.0 3.46e-01 91.9% 66.5%
3927595 3959.1.1.1 alpha duplicates or obligate multimers › Protein Hikeshi dimerization domain › Protein Hikeshi dimerization domain › Protein Hikeshi dimerization domain › Hikeshi-like_C 0.56 41.0 4.12e-01 98.4% 81.5%
4928059 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.55 45.0 3.68e-01 96.8% 76.9%
4978596 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 42.0 3.51e-01 91.9% 76.0%
4955353 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.46e-01 85.5% 83.5%
3390499 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.54 44.0 3.59e-01 100.0% 77.9%
5053551 3241.1.1.1 alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 0.54 47.0 3.32e-01 100.0% 48.1%
4952992 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.54 40.0 3.22e-01 87.1% 54.7%
3321176 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.53 45.0 2.79e-01 100.0% 15.9%
3883105 3226.1.1.1 alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease 0.53 44.0 2.65e-01 100.0% 12.4%
4454794 4207.1.2.0 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.53 38.0 2.94e-01 77.4% 32.0%
4034370 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 40.0 3.41e-01 90.3% 96.7%
2593 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.52 41.0 3.33e-01 91.9% 73.0%
3859550 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 39.0 3.25e-01 85.5% 75.0%
3550987 4207.1.1.1 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Med21 0.52 40.0 3.29e-01 91.9% 44.4%
3973626 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.14e-01 90.3% 66.7%
3234976 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 42.0 3.49e-01 90.3% 70.9%
3394225 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 41.0 3.41e-01 90.3% 80.0%
4224821 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 40.0 3.29e-01 87.1% 90.4%
5035493 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 40.0 3.46e-01 90.3% 73.3%
4975021 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.50 41.0 3.76e-01 96.8% 68.2%
5000789 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 40.0 3.44e-01 90.3% 76.2%
4271212 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 39.0 3.21e-01 87.1% 82.9%
60305 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 41.0 3.45e-01 90.3% 73.6%
3637098 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 40.0 3.20e-01 90.3% 68.4%
3202986 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 40.0 3.28e-01 90.3% 95.2%
4029803 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 39.0 3.19e-01 90.3% 70.8%
3485296 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 40.0 3.41e-01 90.3% 86.7%
D2 high residues 67-206
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01227.28 best GTP_cyclohydroI 166.2 7.30e-49 99.3% 70.4%