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NC_070970.1__YP_010671741.1__PQC31_gp68__00068

Bact-Vir

NC_070970.1__YP_010671741.1__PQC31_gp68__00068

Identity

Accession:
NC_070970 ↗
Kingdom:
phage

Quality

65.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Iggyvirus› Pseudomonas_phage_Iggy

TaxID: 2592193

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-74
PDB
D2 medium residues 78-121
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gb5A01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.79 53.0 3.73e-01 72.7% 23.3%
1l1oC02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.74 48.0 5.12e-01 70.5% 78.9%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.73 50.0 4.47e-01 72.7% 54.8%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.72 50.0 4.95e-01 72.7% 76.1%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.71 50.0 4.44e-01 72.7% 56.5%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.68 51.0 3.74e-01 84.1% 89.5%
1twfB08 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.64 43.0 3.57e-01 70.5% 37.6%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.62 42.0 3.73e-01 72.7% 46.5%
1tzfA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.62 40.0 2.47e-01 72.7% 11.2%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 46.0 3.23e-01 81.8% 45.1%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 3.83e-01 86.4% 72.0%
1ztpA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.57 40.0 2.57e-01 75.0% 30.2%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.55 37.0 3.42e-01 72.7% 70.3%
3g7nB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 42.0 2.77e-01 97.7% 19.8%
4dguA02 2.60.40.2670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 2.92e-01 84.1% 89.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3992738 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 57.0 5.71e-01 72.7% 68.9%
4122844 375.1.1.213 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS 0.82 54.0 5.61e-01 70.5% 75.0%
3564885 375.1.1.44 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase 0.81 53.0 5.98e-01 70.5% 100.0%
4966301 375.1.1.320 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIB 0.81 55.0 6.01e-01 70.5% 88.6%
3222865 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.81 56.0 5.88e-01 72.7% 80.0%
4944100 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 55.0 5.78e-01 72.7% 82.5%
4263170 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.79 54.0 4.63e-01 72.7% 45.7%
4964214 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.79 54.0 5.03e-01 72.7% 63.6%
5043002 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.77 52.0 5.19e-01 72.7% 68.9%
5046920 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.75 51.0 5.15e-01 72.7% 73.3%
5059258 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.75 49.0 3.11e-01 70.5% 13.6%
4287145 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.75 51.0 4.62e-01 72.7% 53.3%
4178833 2.1.1.287 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS 0.72 49.0 3.29e-01 72.7% 18.8%
3330763 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.72 48.0 5.04e-01 70.5% 77.5%
3575430 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 50.0 4.80e-01 75.0% 66.0%
4338996 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.69 47.0 4.31e-01 72.7% 53.3%
5061790 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 52.0 5.21e-01 81.8% 88.9%
1831655 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.67 48.0 4.42e-01 79.5% 59.0%
5000057 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 4.31e-01 100.0% 47.0%
3581878 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.64 44.0 3.89e-01 72.7% 53.8%
3901407 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.63 52.0 4.04e-01 90.9% 56.8%
5022494 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 51.0 4.04e-01 97.7% 54.0%